ppanggolin_env.yaml

name: ppanggolin
channels:
  - bioconda
  - defaults
  - conda-forge
dependencies:
  - tqdm=4
  - pytables=3
  - pyrodigal=3
  - networkx=3
  - dataclasses=0.8
  - scipy=1
  - plotly=5
  - gmpy2=2
  - pandas=2.0
  - colorlover=0.3
  - numpy=1.24
  - bokeh=3
  # Tool that are not in python 
  - infernal=1
  - aragorn=1
  - mmseqs2=15
  - mafft=7