{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":107675156,"defaultBranch":"master","name":"PPanGGOLiN","ownerLogin":"labgem","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-10-20T12:25:15.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/50515420?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717679273.0","currentOid":""},"activityList":{"items":[{"before":"e09e5f7f68df5c5bff9609a47e755503f3a9a9a4","after":"9c8fb76c8565092f08623de2664b95f736843547","ref":"refs/heads/TranslateGene","pushedAt":"2024-06-07T07:45:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Fix createdb mode","shortMessageHtmlLink":"Fix createdb mode"}},{"before":"7e09b19f38b19c8b58183435e76964f429efa934","after":"e09e5f7f68df5c5bff9609a47e755503f3a9a9a4","ref":"refs/heads/TranslateGene","pushedAt":"2024-06-07T07:44:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Improve documentation on write fasta","shortMessageHtmlLink":"Improve documentation on write fasta"}},{"before":null,"after":"2862164faf6b30d4c80379204e112765cb889020","ref":"refs/heads/forMicroScope","pushedAt":"2024-06-06T13:07:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Add gene names and coordinates of the RGP","shortMessageHtmlLink":"Add gene names and coordinates of the RGP"}},{"before":null,"after":"9e7a5e2cb14db0f5b1ad51629eb741c1a51f06e7","ref":"refs/heads/subprocessErr","pushedAt":"2024-06-06T12:58:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Improve logging error subprocess handling","shortMessageHtmlLink":"Improve logging error subprocess handling"}},{"before":"33002f32ad484e4ad8348171d2d92218dad0423b","after":null,"ref":"refs/heads/fix_dup_margin_default","pushedAt":"2024-06-05T15:53:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"}},{"before":"4d4ebd58ad5c7a9f4c99842e11a4461d4b090dbe","after":"85ecdb99c3ba0b9b5e4670d30d81a0cf9ffb981b","ref":"refs/heads/dev","pushedAt":"2024-06-05T15:53:06.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Merge pull request #234 from labgem/fix_dup_margin_default\n\nFix dup margin default value","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2335756129\" data-permission-text=\"Title is private\" data-url=\"https://github.com/labgem/PPanGGOLiN/issues/234\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/labgem/PPanGGOLiN/pull/234/hovercard\" href=\"https://github.com/labgem/PPanGGOLiN/pull/234\">#234</a> from labgem/fix_dup_margin_default"}},{"before":"cf729001e014cd778d8b916841b27db5bda5aef6","after":null,"ref":"refs/heads/fix-226","pushedAt":"2024-06-05T15:52:25.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"}},{"before":"d5e7aacf7764084d306c08cee815000b96583a42","after":"4d4ebd58ad5c7a9f4c99842e11a4461d4b090dbe","ref":"refs/heads/dev","pushedAt":"2024-06-05T15:52:19.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Merge pull request #230 from labgem/fix-226\n\nImprove reading from custom gbff files","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2311501945\" data-permission-text=\"Title is private\" data-url=\"https://github.com/labgem/PPanGGOLiN/issues/230\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/labgem/PPanGGOLiN/pull/230/hovercard\" href=\"https://github.com/labgem/PPanGGOLiN/pull/230\">#230</a> from labgem/fix-226"}},{"before":null,"after":"66960710337e450949bd650999933210655b77a2","ref":"refs/heads/metaID","pushedAt":"2024-06-05T14:51:47.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Fix unit test","shortMessageHtmlLink":"Fix unit test"}},{"before":"af4b3800d3967e2936ed69da64bd4fe841f4ceb8","after":"33002f32ad484e4ad8348171d2d92218dad0423b","ref":"refs/heads/fix_dup_margin_default","pushedAt":"2024-06-05T12:20:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"add aln ext to test msa output","shortMessageHtmlLink":"add aln ext to test msa output"}},{"before":null,"after":"af4b3800d3967e2936ed69da64bd4fe841f4ceb8","ref":"refs/heads/fix_dup_margin_default","pushedAt":"2024-06-05T12:06:44.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"not excluding fragment in multicopy calculation to keep same behavior as before","shortMessageHtmlLink":"not excluding fragment in multicopy calculation to keep same behavior…"}},{"before":"b5ed78e53bf71651955fc133559f109c385980bc","after":"cf729001e014cd778d8b916841b27db5bda5aef6","ref":"refs/heads/fix-226","pushedAt":"2024-06-05T09:59:27.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"give translation table info in annotation fct of projection","shortMessageHtmlLink":"give translation table info in annotation fct of projection"}},{"before":"dde184c7dd750c34fd07c57947a38b5866b384b9","after":"7e09b19f38b19c8b58183435e76964f429efa934","ref":"refs/heads/TranslateGene","pushedAt":"2024-06-05T09:10:43.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Fix bug in projection and refactoring","shortMessageHtmlLink":"Fix bug in projection and refactoring"}},{"before":"eda550452a15153e7a29eb45d0552afc0673efd4","after":"b5ed78e53bf71651955fc133559f109c385980bc","ref":"refs/heads/fix-226","pushedAt":"2024-06-05T09:00:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"give translation_table arg to annotate fct in workflows","shortMessageHtmlLink":"give translation_table arg to annotate fct in workflows"}},{"before":"c889941879fcf51e49acba3ad9f623adfe4cbeef","after":"eda550452a15153e7a29eb45d0552afc0673efd4","ref":"refs/heads/fix-226","pushedAt":"2024-06-04T16:14:40.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"change genetic_code default to 11 in 'read_org_gbff'","shortMessageHtmlLink":"change genetic_code default to 11 in 'read_org_gbff'"}},{"before":null,"after":"d5e7aacf7764084d306c08cee815000b96583a42","ref":"refs/heads/fix-221","pushedAt":"2024-06-04T16:11:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"Merge pull request #212 from labgem/GetGenePos\n\nChange how method get_genes handle end position","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2245423573\" data-permission-text=\"Title is private\" data-url=\"https://github.com/labgem/PPanGGOLiN/issues/212\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/labgem/PPanGGOLiN/pull/212/hovercard\" href=\"https://github.com/labgem/PPanGGOLiN/pull/212\">#212</a> from labgem/GetGenePos"}},{"before":"3f40d38d666caa4f3d9679e44a162928d9edcf06","after":"3731762e8401fed54091428c1840f2ebf72801c1","ref":"refs/heads/improve_rgp_cluster_log","pushedAt":"2024-06-04T15:12:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"optimise some function to make grr computation faster","shortMessageHtmlLink":"optimise some function to make grr computation faster"}},{"before":"d1a9345317d0c54451af74cd1ad64e85ac66d9cc","after":null,"ref":"refs/heads/GetGenePos","pushedAt":"2024-06-04T08:56:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"axbazin","name":"Adelme Bazin","path":"/axbazin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30264003?s=80&v=4"}},{"before":"98a73f32c97af8ec88edb6671bb1ff35b3732eb6","after":"d5e7aacf7764084d306c08cee815000b96583a42","ref":"refs/heads/dev","pushedAt":"2024-06-04T08:56:15.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"axbazin","name":"Adelme Bazin","path":"/axbazin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/30264003?s=80&v=4"},"commit":{"message":"Merge pull request #212 from labgem/GetGenePos\n\nChange how method get_genes handle end position","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2245423573\" data-permission-text=\"Title is private\" data-url=\"https://github.com/labgem/PPanGGOLiN/issues/212\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/labgem/PPanGGOLiN/pull/212/hovercard\" href=\"https://github.com/labgem/PPanGGOLiN/pull/212\">#212</a> from labgem/GetGenePos"}},{"before":"c53b865b182db7651d97f90aecbd052cd710fbdf","after":"d1a9345317d0c54451af74cd1ad64e85ac66d9cc","ref":"refs/heads/GetGenePos","pushedAt":"2024-06-03T15:22:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Fix inconsistent use of tabs and spaces in indentation","shortMessageHtmlLink":"Fix inconsistent use of tabs and spaces in indentation"}},{"before":"cdf43a311cfd80dc0bf9a0ce9effdf98e3f03e2d","after":"3f40d38d666caa4f3d9679e44a162928d9edcf06","ref":"refs/heads/improve_rgp_cluster_log","pushedAt":"2024-06-03T15:18:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"improve log and add progress bar","shortMessageHtmlLink":"improve log and add progress bar"}},{"before":"263ed29a6f66aeaebed7fb6aa5d43b23f96dfdb8","after":"c53b865b182db7651d97f90aecbd052cd710fbdf","ref":"refs/heads/GetGenePos","pushedAt":"2024-06-03T15:14:17.000Z","pushType":"push","commitsCount":169,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into GetGenePos","shortMessageHtmlLink":"Merge branch 'dev' into GetGenePos"}},{"before":"8129bfab155e01e3bcf6e380b84a134f598ef13f","after":"dde184c7dd750c34fd07c57947a38b5866b384b9","ref":"refs/heads/TranslateGene","pushedAt":"2024-06-03T14:54:53.000Z","pushType":"push","commitsCount":105,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Merge branch 'dev' into TranslateGene","shortMessageHtmlLink":"Merge branch 'dev' into TranslateGene"}},{"before":"7d8f7074bb758fba4ec0a49f52606222d8c41152","after":null,"ref":"refs/heads/improve_metadata","pushedAt":"2024-06-03T14:45:04.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"}},{"before":"002931fc1b7bd2953ba7489dd18f831de55f2ef5","after":"98a73f32c97af8ec88edb6671bb1ff35b3732eb6","ref":"refs/heads/dev","pushedAt":"2024-06-03T14:44:50.000Z","pushType":"pr_merge","commitsCount":26,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Merge pull request #227 from labgem/improve_metadata\n\nAdd metadata from annotation files","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2308582100\" data-permission-text=\"Title is private\" data-url=\"https://github.com/labgem/PPanGGOLiN/issues/227\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/labgem/PPanGGOLiN/pull/227/hovercard\" href=\"https://github.com/labgem/PPanGGOLiN/pull/227\">#227</a> from labgem/improve_metadata"}},{"before":null,"after":"cdf43a311cfd80dc0bf9a0ce9effdf98e3f03e2d","ref":"refs/heads/improve_rgp_cluster_log","pushedAt":"2024-06-03T14:37:23.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"Merge pull request #228 from labgem/fix-221\n\nFix 'gene_to_gene_family.tsv' file from projection","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2311356453\" data-permission-text=\"Title is private\" data-url=\"https://github.com/labgem/PPanGGOLiN/issues/228\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/labgem/PPanGGOLiN/pull/228/hovercard\" href=\"https://github.com/labgem/PPanGGOLiN/pull/228\">#228</a> from labgem/fix-221"}},{"before":"6ca28c76f8135280ca4361ac589b7481d194eeb4","after":"7d8f7074bb758fba4ec0a49f52606222d8c41152","ref":"refs/heads/improve_metadata","pushedAt":"2024-06-03T14:13:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Change in response to PR comments","shortMessageHtmlLink":"Change in response to PR comments"}},{"before":"d0ab02180dc63ccf2b5f76e2ff769fc36c19b08b","after":null,"ref":"refs/heads/AnnotJoin","pushedAt":"2024-06-03T09:27:35.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"}},{"before":"cdf43a311cfd80dc0bf9a0ce9effdf98e3f03e2d","after":"002931fc1b7bd2953ba7489dd18f831de55f2ef5","ref":"refs/heads/dev","pushedAt":"2024-06-03T09:27:25.000Z","pushType":"pr_merge","commitsCount":78,"pusher":{"login":"jpjarnoux","name":"Jérôme Arnoux","path":"/jpjarnoux","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39793176?s=80&v=4"},"commit":{"message":"Merge pull request #206 from labgem/AnnotJoin\n\nManage annotation with joined coordinates","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2213785416\" data-permission-text=\"Title is private\" data-url=\"https://github.com/labgem/PPanGGOLiN/issues/206\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/labgem/PPanGGOLiN/pull/206/hovercard\" href=\"https://github.com/labgem/PPanGGOLiN/pull/206\">#206</a> from labgem/AnnotJoin"}},{"before":"d39fb848bdb5e80329547ab67a998a83fec07c4e","after":"d0ab02180dc63ccf2b5f76e2ff769fc36c19b08b","ref":"refs/heads/AnnotJoin","pushedAt":"2024-05-28T07:59:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"JeanMainguy","name":"Jean Mainguy","path":"/JeanMainguy","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28706177?s=80&v=4"},"commit":{"message":"fix docstring issues highligted by @jpjarnoux review","shortMessageHtmlLink":"fix docstring issues highligted by <a class=\"user-mention notranslate\" data-hovercard-type=\"user\" data-hovercard-url=\"/users/jpjarnoux/hovercard\" data-octo-click=\"hovercard-link-click\" data-octo-dimensions=\"link_type:self\" href=\"https://github.com/jpjarnoux\">@jpjarnoux</a> review"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXvVIywA","startCursor":null,"endCursor":null}},"title":"Activity · labgem/PPanGGOLiN"}