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make_pages.py
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/
make_pages.py
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import os
import re
import girder_client
from yt.funcs import get_pbar
from fiducial_defs import fid_dict, fid_info, fid_physics, fid_acks
from sloshing_defs import slosh_dict, slosh_info, slosh_physics, slosh_acks
from virgo_defs import virgo_dict, virgo_info, virgo_physics, virgo_acks
from magnetic_defs import mag_dict, mag_info, mag_physics, mag_acks
from omega_defs import omega_dict, omega_info, omega_physics, omega_acks
import argparse
from collections import OrderedDict
import jinja2
from six import string_types
GIRDER_API_URL = "https://girder.hub.yt/api/v1"
gc = girder_client.GirderClient(apiUrl=GIRDER_API_URL)
def make_set_page(set_info, set_dict, set_physics, set_acks):
set_physics_dict = OrderedDict([(k, (set_dict[k].name, set_dict[k].filenos))
for k in set_physics])
set_path = os.path.join('source', set_info['name'])
if not os.path.exists(set_path):
os.mkdir(set_path)
for sim, sim_info in set_dict.items():
totsize = make_epoch_pages(set_info['name'], set_info['filespec'], sim, sim_info.name,
sim_info.filenos, sim_info.sname_map, sim_info.lname_map,
sim_info.unit_map, set_info["cadence"], sim_info.proj_axes,
sim_info.slice_axes, set_physics_dict, sim_info.cat_type,
sim_info.halo_info)
make_sim_page(set_info['name'], set_info["filespec"], sim, sim_info.name,
sim_info.filenos, sim_info.sname_map, sim_info.lname_map,
set_info["cadence"], sim_info.proj_axes, sim_info.cat_type, totsize)
sim_pages = []
for key in set_dict:
if isinstance(key, tuple):
sim_pages.append('_'.join(key))
else:
sim_pages.append(key)
context = {'name': set_info["name"],
'sim_pages': sim_pages,
'set_name': set_info["set_name"],
'set_journals': set_info["set_journals"],
'box_size': set_info["box_size"],
'cell_size': set_info["cell_size"],
'sim_type': set_info['sim_type'],
'code': set_info['code'],
'primary_mass': set_info["primary_mass"],
'sim_notes': set_info['sim_notes'],
'notes': set_info['notes'],
'cosmo_warning': set_info['cosmo_warning'],
'cosmo': sim_info.cosmo,
'redshift': set_info['redshift'],
'acks': set_acks}
template_file = 'templates/set_template.rst'
make_template('source/%s/index.rst' % set_info["name"], template_file, context)
def make_sim_page(set_name, filespec, sim, sim_name, filenos, sname_map,
lname_map, cadence, proj_axes, cat_type, totsize):
if isinstance(sim, tuple):
sim_path = list(sim)
sim = sim[-1]
else:
sim_path = [sim]
sim_dir = os.path.join('source', set_name, '_'.join(sim_path))
outfile = sim_dir+"/index.rst"
if not os.path.exists(outfile):
pbar = get_pbar("Setting up simulation page for %s" % (sim_path,), len(filenos))
files = OrderedDict()
imgs = OrderedDict()
for fileno in filenos:
pngs = {}
for ax in proj_axes:
pngs[ax] = {}
for fd, field in sname_map["proj"].items():
filename = filespec % (sim, fileno) + "_proj_%s_%s" % (ax, field)
pngs[ax][fd] = get_file(filename, "proj")
if cat_type == "epoch":
files[fileno] = "t = %4.2f Gyr" % (float(fileno)*cadence)
elif cat_type == "halo":
files[fileno] = "Halo ID %d" % (int(fileno))
imgs[fileno] = pngs
pbar.update()
pbar.finish()
simfd = get_folder('/'.join([set_name, *sim_path]))
sim_dl = "https://girder.hub.yt/api/v1/folder/%s/download" % simfd["_id"]
num_fids = len(files.keys())
context = {'sim_name': sim_name,
'sim_dl': sim_dl,
'size': "%.2f" % totsize,
'proj_axes': proj_axes,
'cat_type': "epoch" if cat_type == "epoch" else "halo",
'files': files,
'imgs': imgs,
'num_fids': num_fids-1,
'filenos': filenos,
'names': lname_map["proj"]}
template_file = 'templates/sim_template.rst'
make_template(outfile, template_file, context)
def make_template(outfile, template_file, context):
template = open(template_file).read()
template = re.sub(r' %}\n', ' %}', template)
template = jinja2.Template(template)
open(outfile, 'w').write(template.render(**context))
def make_epoch_pages(set_name, filespec, sim, sim_name, filenos, sname_map,
lname_map, unit_map, cadence, proj_axes, slice_axes,
set_physics, cat_type, halo_info):
totsize = 0.0
pbar = get_pbar("Setting up epoch pages for simulation %s " % (sim,), len(filenos))
if isinstance(sim, tuple):
sim_path = list(sim)
sim = sim[-1]
else:
sim_path = [sim]
sim_dir = os.path.join('source', set_name, '_'.join(sim_path))
if not os.path.exists(sim_dir):
os.mkdir(sim_dir)
num_epochs = len(filenos)
for noi, fileno in enumerate(filenos):
outfile = os.path.join('source', set_name, '_'.join(sim_path), "%s.rst" % fileno)
setp = OrderedDict([(sim, val[0]) for sim, val in set_physics.items()
if fileno in val[-1]])
if not os.path.exists(outfile):
data = {}
for itype in sname_map.keys():
data[itype] = OrderedDict()
for ax in proj_axes:
if itype == "slice" and ax not in slice_axes:
continue
data[itype][ax] = {}
if itype == "galaxies":
filename = "_".join([set_name, sim, fileno]) + "_%s_%s" % (itype, ax)
else:
filename = filespec % (sim, fileno) + "_%s_%s" % (itype, ax)
data[itype][ax]['fits'] = get_file(filename, itype)
if itype == "galaxies":
gal_files = get_file(filename, itype)
data[itype][ax]['reg'] = gal_files['reg']
data[itype][ax]['fits'] = gal_files['fits']
else:
data[itype][ax]['fits'] = get_file(filename, itype)
imgs = {}
for link, field in sname_map[itype].items():
imgfn = filename+"_"+field
imgs[link] = get_file(imgfn, itype)
data[itype][ax]['pngs'] = imgs
template_file = 'templates/epoch_template.rst'
if cat_type == "epoch":
filestr = "t = %4.2f Gyr" % (float(fileno)*cadence)
elif cat_type == "halo":
filestr = "Halo ID %d" % (int(fileno))
if noi == 0:
prev_link = ""
dis_prev = "disabled"
else:
prev_link = "%s.html" % filenos[noi-1]
dis_prev = ""
if noi == num_epochs-1:
next_link = ""
dis_next = "disabled"
else:
next_link = "%s.html" % filenos[noi+1]
dis_next = ""
epochfd = get_folder('/'.join([set_name, *sim_path, fileno]))
epoch_dl = "https://girder.hub.yt/api/v1/folder/%s/download" % epochfd["_id"]
size = epochfd["size"]/(1024.*1024.*1024.)
totsize += size
hub_folder = "https://girder.hub.yt/#collection/57c866a07f2483000181aefa/folder/"+epochfd["_id"]
if halo_info is not None:
hinfo = halo_info[noi]
else:
hinfo = None
context = {"data": data,
"sim": sim,
"epoch_dl": epoch_dl,
"size": "%.2f" % size,
"fileno": fileno,
"sim_name": sim_name,
"filestr": filestr,
"slice_axes": len(slice_axes) > 1,
"slice_names": lname_map["slice"],
"proj_names": lname_map["proj"],
"sz_names": lname_map.get("SZ", []),
"slice_fields": unit_map["slice"],
"proj_fields": unit_map["proj"],
"sz_fields": unit_map.get("SZ", []),
"xray_events": "cxo_evt" in lname_map,
"galaxies": "galaxies" in sname_map.keys(),
"prev_link": prev_link,
"next_link": next_link,
"dis_prev": dis_prev,
"dis_next": dis_next,
"hub_folder": hub_folder,
"hinfo": hinfo,
"cat_type": "epoch" if cat_type == "epoch" else "halo",
"set_physics": setp if sim in setp else {}}
make_template(outfile, template_file, context)
pbar.update()
pbar.finish()
return totsize
def get_file(filename, itype):
items = gc.get("resource/search", {"q": '"'+filename+'"', "types": '["item"]'})['item']
if len(items) == 0:
return "https://girder.hub.yt/static/built/plugins/ythub/extra/img/yt_logo.png"
elif itype == "galaxies" and len(items) >= 2:
gals = {}
for item in items:
if "fits" in item['name']:
gals["fits"] = "https://girder.hub.yt/api/v1/item/%s/download" % item['_id']
elif "reg" in item['name']:
gals["reg"] = "https://girder.hub.yt/api/v1/item/%s/download" % item['_id']
return gals
else:
return "https://girder.hub.yt/api/v1/item/%s/download" % items[0]['_id']
def get_folder(folder):
folder_path = os.path.join('/collection', 'cluster_mergers', folder)
folder = gc.get("resource/lookup", {"path": folder_path})
return folder
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--test", action='store_true')
args = parser.parse_args()
make_set_page(fid_info, fid_dict, fid_physics, fid_acks)
make_set_page(slosh_info, slosh_dict, slosh_physics, slosh_acks)
make_set_page(virgo_info, virgo_dict, virgo_physics, virgo_acks)
make_set_page(mag_info, mag_dict, mag_physics, mag_acks)
make_set_page(omega_info, omega_dict, omega_physics, omega_acks)