-
Notifications
You must be signed in to change notification settings - Fork 80
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
How to use data obtained from other software to start from the middle of the steps of SqueezeMeta and run the subsequent steps? #821
Comments
Hi! |
Hello |
Hello
But your files still have the original funannotate format, something like Best, |
I used funannotate software to predict the genes in the assembled metagenomic sequences and obtained the corresponding result files. I want to run steps 4 to 16 in SqueezeMeta, using these result files as input files directly.
However, I only saw in the software instructions that SqueezeMeta supports restarting from a certain step or re-running a certain script. These seem to require using the intermediate output files from the initial run of SqueezeMeta as input to the steps needing re-run. And the input of SqueezeMeta is only the paired-end sequence files (.fq.gz) obtained by sequencing.
So, what can I do to use the result files of funannotate software as input of steps 4 to 16 in SqueezeMeta?
The text was updated successfully, but these errors were encountered: