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"zip file is corrupt" when loading a zipped project into SQMtools #755

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fpusan opened this issue Nov 19, 2023 · 1 comment
Open

"zip file is corrupt" when loading a zipped project into SQMtools #755

fpusan opened this issue Nov 19, 2023 · 1 comment
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bug Something isn't working SQMtools

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@fpusan
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fpusan commented Nov 19, 2023

This happens for certain projects when running SQMtools on certain R versions.
I suspect it's related to R's internal unzip engine not being able to deal with files greater than 2Gb.
A workaround is to

  1. Move the project.zip file into an empty folder also named project.
  2. Uncompress project.zip there (so that the SqueezeMeta_conf.pl file, the results directory, etc... are directly inside the project folder.
  3. Load the project normally with SQM=loadSQM("/path/to/project")
    I will try to have this fixed for the next release.
@fpusan
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fpusan commented Nov 19, 2023

71d5597 switches from using utils::unzip to using zip::unzip for reading zip files during loadSQM.
This fixes the problem for some projects, but eventually I run into r-lib/zip#100 . The error happened with the example file mentioned by OP as well as with an example zipped SQM project.

@fpusan fpusan added bug Something isn't working SQMtools labels Jan 16, 2024
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