{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":125362118,"defaultBranch":"master","name":"SqueezeMeta","ownerLogin":"jtamames","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-03-15T12:11:57.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/34687997?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1716887430.0","currentOid":""},"activityList":{"items":[{"before":"b0aa66b9d5ef3047110300af7cbe267f2fe49d01","after":"038281b7cf5cfe776d8a7949ae355e591ccfd4ab","ref":"refs/heads/develop","pushedAt":"2024-06-01T16:49:27.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"add checkm2","shortMessageHtmlLink":"add checkm2"}},{"before":"d7438348e23066003b8708a5f68154c68947b53b","after":"b0aa66b9d5ef3047110300af7cbe267f2fe49d01","ref":"refs/heads/develop","pushedAt":"2024-05-31T14:16:43.000Z","pushType":"push","commitsCount":77,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"merge binonly into develop","shortMessageHtmlLink":"merge binonly into develop"}},{"before":"a5593c0d0978814a66a4631db8f463754eac125c","after":"d7438348e23066003b8708a5f68154c68947b53b","ref":"refs/heads/develop","pushedAt":"2024-05-30T10:14:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"Fixing calculation of prsent pathways in 20","shortMessageHtmlLink":"Fixing calculation of prsent pathways in 20"}},{"before":"548cda6c8080e4b6e934aa67719e351c94365556","after":"9f29c6e79878fe93444bca2c3a5aecc4bf132b2b","ref":"refs/heads/binonly","pushedAt":"2024-05-28T09:10:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"update DIAMOND to 2.1.9","shortMessageHtmlLink":"update DIAMOND to 2.1.9"}},{"before":"cf20e77958657db839cc35af7a6783ca4d2b85e0","after":null,"ref":"refs/heads/main","pushedAt":"2024-05-28T09:10:30.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"}},{"before":null,"after":"cf20e77958657db839cc35af7a6783ca4d2b85e0","ref":"refs/heads/main","pushedAt":"2024-05-28T09:10:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"revert logging","shortMessageHtmlLink":"revert logging"}},{"before":"2f74e659dc9018e2a343ac9bedba98027d17ce77","after":"a5593c0d0978814a66a4631db8f463754eac125c","ref":"refs/heads/develop","pushedAt":"2024-05-21T13:02:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"New calculation of disparity for 06","shortMessageHtmlLink":"New calculation of disparity for 06"}},{"before":"f9afb4edc3aea5ad772236311c2a54260cca4d90","after":"548cda6c8080e4b6e934aa67719e351c94365556","ref":"refs/heads/binonly","pushedAt":"2024-05-21T09:36:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"exit gracefully if no good polymorphic sites remain","shortMessageHtmlLink":"exit gracefully if no good polymorphic sites remain"}},{"before":"2e7e7c1c0939c533ec59c810ea24fe209f1d86a5","after":"f9afb4edc3aea5ad772236311c2a54260cca4d90","ref":"refs/heads/binonly","pushedAt":"2024-05-10T09:32:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"attach data.table without needing to run loadSQM, fixes #840","shortMessageHtmlLink":"attach data.table without needing to run loadSQM, fixes #840"}},{"before":"cd49112d0cbdc4cac5a8eccdcbe7163c03740578","after":"2f74e659dc9018e2a343ac9bedba98027d17ce77","ref":"refs/heads/develop","pushedAt":"2024-05-06T13:56:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"Change of calculation of disparity, to be just the ratio of contigs disagreeing the consensus. Faster","shortMessageHtmlLink":"Change of calculation of disparity, to be just the ratio of contigs d…"}},{"before":"6bc404d59306f4453f66520b93cdcb1aa2918c55","after":"edf13b13a8336f5952b2ee9cd896be816036f3c4","ref":"refs/heads/master","pushedAt":"2024-05-04T10:52:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"better logic for evaluating whether step 16 is ok, addressess #836","shortMessageHtmlLink":"better logic for evaluating whether step 16 is ok, addressess #836"}},{"before":"a376365ad14528a19846906eabb32370b7bbf42b","after":"2e7e7c1c0939c533ec59c810ea24fe209f1d86a5","ref":"refs/heads/binonly","pushedAt":"2024-05-01T11:31:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"install speedict wheel built with lower version of glibc so it works in CentOS7","shortMessageHtmlLink":"install speedict wheel built with lower version of glibc so it works …"}},{"before":"64b5d44c0c94fee190f6556f42a156f363ffa98c","after":"a376365ad14528a19846906eabb32370b7bbf42b","ref":"refs/heads/binonly","pushedAt":"2024-04-29T08:35:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"fix copying bin files to final dir when there's only one binner","shortMessageHtmlLink":"fix copying bin files to final dir when there's only one binner"}},{"before":"f28442d7ebfb0be99c7cdca2760a57a9accfa75b","after":"64b5d44c0c94fee190f6556f42a156f363ffa98c","ref":"refs/heads/binonly","pushedAt":"2024-04-26T16:25:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"fix some IDs missing from SQM names and paths vectors after combineSQMlite","shortMessageHtmlLink":"fix some IDs missing from SQM names and paths vectors after combineSQ…"}},{"before":"7662bd9066b4939c8ff3fc561af37f1c0cb5ac52","after":"6bc404d59306f4453f66520b93cdcb1aa2918c55","ref":"refs/heads/master","pushedAt":"2024-04-26T12:05:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"fix corner cases while restarting, addresses #833","shortMessageHtmlLink":"fix corner cases while restarting, addresses #833"}},{"before":"e6ccd9a7cc2102fce7a85ad5a41f9e47d4e88c2a","after":"7662bd9066b4939c8ff3fc561af37f1c0cb5ac52","ref":"refs/heads/master","pushedAt":"2024-04-25T13:35:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"reminder that input paired-end libraries must be truly paired, see #812","shortMessageHtmlLink":"reminder that input paired-end libraries must be truly paired, see #812"}},{"before":"dfec6439c2602404cf8f173a1689574d216c3513","after":"e6ccd9a7cc2102fce7a85ad5a41f9e47d4e88c2a","ref":"refs/heads/master","pushedAt":"2024-04-25T12:44:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"test for DB_BUILD_DATE and report the date if present","shortMessageHtmlLink":"test for DB_BUILD_DATE and report the date if present"}},{"before":"0aaa8c7dc4b6c86287d41d6ac6ace0f598954d52","after":"cd49112d0cbdc4cac5a8eccdcbe7163c03740578","ref":"refs/heads/develop","pushedAt":"2024-04-23T15:12:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"stop binning if all files have the \"nobinnin\" flag, avoids #829","shortMessageHtmlLink":"stop binning if all files have the \"nobinnin\" flag, avoids #829"}},{"before":"14747ba7cfaa8b258becf271ed463d9a14ce096b","after":"f28442d7ebfb0be99c7cdca2760a57a9accfa75b","ref":"refs/heads/binonly","pushedAt":"2024-03-26T13:36:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"make step 18 work without step 10, and hopefully update nextflow","shortMessageHtmlLink":"make step 18 work without step 10, and hopefully update nextflow"}},{"before":"2dd916284ff52eff5b355bbc1a87369f3ceb0f4c","after":"14747ba7cfaa8b258becf271ed463d9a14ce096b","ref":"refs/heads/binonly","pushedAt":"2024-03-18T11:57:42.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"Merge branch 'master' into binonly","shortMessageHtmlLink":"Merge branch 'master' into binonly"}},{"before":"17ffc7f427cc3e05e28bd09c9481e08bfb4adb42","after":"0aaa8c7dc4b6c86287d41d6ac6ace0f598954d52","ref":"refs/heads/develop","pushedAt":"2024-03-11T13:26:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"Fixing parameters in binning","shortMessageHtmlLink":"Fixing parameters in binning"}},{"before":"6739485892fa03204d474ff2bfbaedaa69f0762e","after":"dfec6439c2602404cf8f173a1689574d216c3513","ref":"refs/heads/master","pushedAt":"2024-03-05T12:53:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"update docs, clarify #804","shortMessageHtmlLink":"update docs, clarify #804"}},{"before":"36b2410c9e8e4348178a97ff8aad132851fbf6f4","after":"17ffc7f427cc3e05e28bd09c9481e08bfb4adb42","ref":"refs/heads/develop","pushedAt":"2024-02-22T13:59:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"more fixes to sqm2itol","shortMessageHtmlLink":"more fixes to sqm2itol"}},{"before":"e33bfdfb54f273fba1665af5111b25d73e2b073a","after":"36b2410c9e8e4348178a97ff8aad132851fbf6f4","ref":"refs/heads/develop","pushedAt":"2024-02-22T09:58:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"Fixing sqm2itol.pl","shortMessageHtmlLink":"Fixing sqm2itol.pl"}},{"before":"43a97613b62a158cce27532dc750e377460f05d5","after":"2dd916284ff52eff5b355bbc1a87369f3ceb0f4c","ref":"refs/heads/binonly","pushedAt":"2024-02-06T15:13:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"avoid replicate fst calculation if there's only one valid sample","shortMessageHtmlLink":"avoid replicate fst calculation if there's only one valid sample"}},{"before":"22e40d81f1d2dde466b64412b5de89e051862d23","after":"e33bfdfb54f273fba1665af5111b25d73e2b073a","ref":"refs/heads/develop","pushedAt":"2024-02-02T11:25:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"Fixing paths for using new tax db","shortMessageHtmlLink":"Fixing paths for using new tax db"}},{"before":"706629da186f36c0b177341b45e09305d1812cf9","after":"43a97613b62a158cce27532dc750e377460f05d5","ref":"refs/heads/binonly","pushedAt":"2024-02-01T18:28:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"copy bins without raising errors if only one binner was selected","shortMessageHtmlLink":"copy bins without raising errors if only one binner was selected"}},{"before":"8280ddeab46ba16a3bf4736d6ef9c04af145a8ee","after":"22e40d81f1d2dde466b64412b5de89e051862d23","ref":"refs/heads/develop","pushedAt":"2024-02-01T15:05:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"Fixing some bugs","shortMessageHtmlLink":"Fixing some bugs"}},{"before":"78edcfaf9824bf95700997a1170c78b8b459d34c","after":"6739485892fa03204d474ff2bfbaedaa69f0762e","ref":"refs/heads/master","pushedAt":"2023-12-26T13:47:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jtamames","name":"Javier Tamames","path":"/jtamames","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34687997?s=80&v=4"},"commit":{"message":"Update sqm2itol.pl for changing numbering of script 20","shortMessageHtmlLink":"Update sqm2itol.pl for changing numbering of script 20"}},{"before":"cb2f3a494d1ab17ec5a17eabd2af7b91873f312f","after":"706629da186f36c0b177341b45e09305d1812cf9","ref":"refs/heads/binonly","pushedAt":"2023-12-08T10:32:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"fpusan","name":"Fernando Puente-Sánchez","path":"/fpusan","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8419198?s=80&v=4"},"commit":{"message":"include POGENOM and fix conda recipe","shortMessageHtmlLink":"include POGENOM and fix conda recipe"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEWc-s9AA","startCursor":null,"endCursor":null}},"title":"Activity · jtamames/SqueezeMeta"}