install packages using pip

[lingfengxu]

pip version 21.3.1 (the latest) is needed, otherwise you will meet errors while installing packages using pip.

[lingfengxu]

cd DNABERT
python3 -m pip install --editable .
cd examples
python3 -m pip install -r requirements.txt
You can try several times to ensure you successfully install all packages required.

[lingfengxu]

git clone https://github.com/NVIDIA/apex
cd apex
pip install -v --no-cache-dir --global-option="--cpp_ext" --global-option="--cuda_ext" ./
python version >= 3.7 is needed. However, the instruction specifies python version 3.6.