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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(pangenome)
import(DECIPHER)
import(pagoo)
importFrom(BiocGenerics,NROW)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,DNAStringSetList)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,subseq)
importFrom(Biostrings,translate)
importFrom(Biostrings,writeXStringSet)
importFrom(R6,R6Class)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,"mcols<-")
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,elementNROWS)
importFrom(S4Vectors,mcols)
importFrom(S4Vectors,split)
importFrom(ape,bionj)
importFrom(ape,bionjs)
importFrom(ape,cophenetic.phylo)
importFrom(ape,drop.tip)
importFrom(digest,digest)
importFrom(gggenes,geom_gene_arrow)
importFrom(gggenes,theme_genes)
importFrom(ggplot2,aes)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,theme)
importFrom(parallel,mclapply)
importFrom(parallel,splitIndices)
importFrom(phangorn,Ancestors)
importFrom(phangorn,Descendants)
importFrom(phangorn,add.tips)
importFrom(phangorn,midpoint)
importFrom(reshape2,melt)
importFrom(stats,as.dist)
importFrom(stats,cutree)
importFrom(stats,hclust)
importFrom(stats,setNames)
importFrom(textreuse,minhash_generator)
importFrom(utils,capture.output)
importFrom(utils,write.table)
useDynLib(pewit, .registration = TRUE)