Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

new bee/pollen dataset #951

Open
seltmann opened this issue Dec 13, 2023 · 1 comment
Open

new bee/pollen dataset #951

seltmann opened this issue Dec 13, 2023 · 1 comment

Comments

@seltmann
Copy link
Member

A new dataset about bees and pollen hosts is here: https://figshare.com/s/76b80dd1fbe365e9fc5b

From paper published here: https://link.springer.com/article/10.1186/s12862-023-02175-1#availability-of-data-and-materials

Interestingly, this is not visitation data but very specialised interaction of carrying pollen of, or found in nest of.

@jhpoelen
Copy link
Member

@seltmann thanks for sharing the pollen - bee dataset. Just had a peek at the dataset, and found that they used the matrix form instead of preferred edge list form.

Their format (roughly)

plant pollen name bee name 1 bee name 2 bee name 3
Plantus domesticus Apis Buzzis ...
... ... ... ....

and the preferred format is:

sourceTaxon interactionType targetTaxon
Plantus domesticus foundOn Apis
Plantus domesticus foundOn Buzzis
... ... ...

any chance we can convince the authors to change their format?

Or should we venture to make Elton understand a matrix format . . . even through the format is not easy to extend and process, the interaction matrix does appear to be a popular way to express interactions.

@seltmann curious to hear your thoughts

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants