Assertion failed: (genomicdnaptr < aftergenomicdnaline) #bug

[cestaroa]

Problem description

Running genomethreader with genome and protein I had the following error :

Assertion failed: (genomicdnaptr < aftergenomicdnaline), function construct_genomic_dna_line, file src/gth/gthalignment.c, line 396.
This is a bug, please report it at
https://github.com/genometools/genometools/issues
Please make sure you are running the latest release which can be found at
http://genometools.org/pub/
You can check your version number with `gt -version`...

Exact command line call triggering the problem

gth -genomic 55e20_minion.fasta -protein 55e20_Vs_GCF_002114115.1_blastx_sbjct.fasta -species arabidopsis -v -paralogs -mincutoffs -o 55e20_Vs_GCF_002114115.1_gth_mincutoffs

Example minimal input triggering the problem

55e20_minion.fasta

>tig00000057 len=188192 reads=462 covStat=29103.25 gappedBases=no class=contig suggestRepeat=no suggestCircular=yes
CACTAATTCTAATTTTGCAAGTTGACCTCAAGTGAGAAACAATTAATCACAATGTCCCTG
CCCTCCATCTAAGATAATAAAGCATTATATGAATAACAGTAAATAATCTACCGAGAACAT
GTAGTATCATCTAACAGTAATGAGTTCTCTATTCTGACATCTACCAAGTCTAGACTAGAG
GCGAACTTTGACATCTAAGCGCAGCACAAAAACCACTTGAGAGTAGCATTTGAAAAAATG

55e20_Vs_GCF_002114115.1_blastx_sbjct.fasta

>NP_001315727.1 disease resistance protein TAO1-like [Malus domestica]
MDNWSSLGKLLIMVLVLLSYHYAHRNSGLVFDVLIFLLCSLGLVFRQMNISVPDKTSSSS
SSSPSSSSSSSASSSSSSTSSTSSPSISSSSSTSASPSLSSFSKGLLYEVFISFRGEDTR

What GenomeTools version are you reporting an issue for (as output by gt -version)?

gth (GenomeThreader) 1.7.3
libgenometools-1.6.1:
Copyright (c) 2003-2018 G. Gremme, S. Steinbiss, S. Kurtz, and CONTRIBUTORS
Copyright (c) 2003-2018 Center for Bioinformatics, University of Hamburg
libgenomethreader:
Copyright (c) 2009-2018 Wikena GmbH
libvmatch:
Copyright (c) 2000-2017 LScSA-Software GmbH
Email: gordon@gremme.org
Used compiler: gcc (Ubuntu 7.4.0-1ubuntu1~18.04.1) 7.4.0
Compile flags:  -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -fno-stack-protector -Wno-unknown-pragmas -Wno-error=misleading-indentation -Werror -O3

Did you compile GenomeTools from source? If so, please state the make parameters used.

No. Executables were downloaded from : http://genomethreader.org/

What operating system (e.g. Ubuntu, Mac OS X), OS version (e.g. 15.10, 10.11) and platform (e.g. x86_64) are you using?

Linux version 5.5.10-200.fc31.x86_64 (mockbuild@bkernel03.phx2.fedoraproject.org) (gcc version 9.2.1 20190827 (Red Hat 9.2.1-1) (GCC)) #1 SMP Wed Mar 18 14:21:38 UTC 2020
Fedora release 31 (Thirty One)