FAILED error

[SNgalaxy]

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[SNgalaxy]

Hi There,

I have searched for this error everywhere and I can't get it worked. I am trying to use the IBS matrix from plink in GEMMA and it gives me the error below:

**** FAILED: number of columns in the kinship file does not match the number of individuals for row = 0

the IBS matrix is built by the --distancs ibs flag in plink and the Gemma code is as below. I appreciate it of you could let me know what is the issues? I am trying to correct for the repeated measurements in my samples.

gemma-0.98.5-linux-static-AMD64 -bfile tmp.genotype
-p expression.txt
-km 1 -k IBS_matrix.mibs
-lmm 4 -o association_outcome

Regards,
SN