Error 'GeneralTrait' object has no attribute 'description_display' when working with collection ("shopping cart") #723
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While I'm not sure if this is the issue, the http URL seems to not always
work correctly. Try the https URL and see if it still doesn't work.
This might not be the cause of your issue, but it's the first thing that
came to mind. If you still have this issue after using the https url, can
you give the specific traits/datasets (or if there are any user-entered
traits)?
…On Tue, Aug 23, 2022 at 3:40 AM rupertoverall ***@***.***> wrote:
I am hitting the following error when trying to add a trait to a
non-default collection or to view the non-default collection from the
collections list (http://genenetwork.org/collections/list). The
non-default collection includes traits from several different series in the
BXD family (phenotypes, hippocampal mRNA expression, liver mRNA expression).
Adding the same traits to the default collection seems to work.
------------------------------
GeneNetwork tux01:gene:2.11-rc2-HEAD-3e1f9f2b6
http://genenetwork.org/collections/view?uc_id=904b5144-5537-4d1f-a64c-adf2bffea68a
( 8:30AM UTC Aug 23, 2022)
Traceback (most recent call last):
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
line 1513, in full_dispatch_request
rv = self.dispatch_request()
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
line 1499, in dispatch_request
return
self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 286, in
view_collection
return render_template(
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py",
line 147, in render_template
return _render(
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py",
line 128, in _render
rv = template.render(context)
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py",
line 1304, in render
self.environment.handle_exception()
File
"/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py",
line 925, in handle_exception
raise rewrite_traceback_stack(source=source)
File
"/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html",
line 1, in top-level template code
{% extends "base.html" %}
File "/home/gn2/production/gene/wqflask/wqflask/templates/base.html", line
150, in top-level template code
{% block content %}
File
"/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html",
line 121, in block 'content'
data-trait-info="{{trait_info_str(this_trait)}}">
File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 230, in
trait_info_str
trait.name, trait.dataset.name, __trait_desc(trait), __symbol(trait),
File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 196, in
__trait_desc
return trt.description_display or "N/A"
AttributeError: 'GeneralTrait' object has no attribute
'description_display'
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zsloan ***@***.***> aliandika:
While I'm not sure if this is the issue, the http URL seems to not always
work correctly. Try the https URL and see if it still doesn't work.
Should this be the case, we should have forced
https re-directs probably somewhere in Nginx.
… This might not be the cause of your issue, but it's the first thing that
came to mind. If you still have this issue after using the https url, can
you give the specific traits/datasets (or if there are any user-entered
traits)?
On Tue, Aug 23, 2022 at 3:40 AM rupertoverall ***@***.***>
wrote:
> I am hitting the following error when trying to add a trait to a
> non-default collection or to view the non-default collection from the
> collections list (http://genenetwork.org/collections/list). The
> non-default collection includes traits from several different series in the
> BXD family (phenotypes, hippocampal mRNA expression, liver mRNA expression).
> Adding the same traits to the default collection seems to work.
> ------------------------------
>
> GeneNetwork tux01:gene:2.11-rc2-HEAD-3e1f9f2b6
> http://genenetwork.org/collections/view?uc_id=904b5144-5537-4d1f-a64c-adf2bffea68a
> ( 8:30AM UTC Aug 23, 2022)
> Traceback (most recent call last):
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1513, in full_dispatch_request
> rv = self.dispatch_request()
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
> line 1499, in dispatch_request
> return
> self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
> File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 286, in
> view_collection
> return render_template(
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py",
> line 147, in render_template
> return _render(
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py",
> line 128, in _render
> rv = template.render(context)
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py",
> line 1304, in render
> self.environment.handle_exception()
> File
> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py",
> line 925, in handle_exception
> raise rewrite_traceback_stack(source=source)
> File
> "/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html",
> line 1, in top-level template code
> {% extends "base.html" %}
> File "/home/gn2/production/gene/wqflask/wqflask/templates/base.html", line
> 150, in top-level template code
> {% block content %}
> File
> "/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html",
> line 121, in block 'content'
> data-trait-info="{{trait_info_str(this_trait)}}">
> File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 230, in
> trait_info_str
> trait.name, trait.dataset.name, __trait_desc(trait), __symbol(trait),
> File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 196, in
> __trait_desc
> return trt.description_display or "N/A"
> AttributeError: 'GeneralTrait' object has no attribute
> 'description_display'
>
> —
> Reply to this email directly, view it on GitHub
> <#723>, or unsubscribe
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#723 (comment)
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Could this have anything to do with the fallback machine?
I have been made aware on a different thread that this runs on http. Just a thought...
… On 23. Aug 2022, at 13:52, BonfaceKilz ***@***.***> wrote:
zsloan ***@***.***> aliandika:
> While I'm not sure if this is the issue, the http URL seems to not always
> work correctly. Try the https URL and see if it still doesn't work.
>
Should this be the case, we should have forced
https re-directs probably somewhere in Nginx.
> This might not be the cause of your issue, but it's the first thing that
> came to mind. If you still have this issue after using the https url, can
> you give the specific traits/datasets (or if there are any user-entered
> traits)?
>
> On Tue, Aug 23, 2022 at 3:40 AM rupertoverall ***@***.***>
> wrote:
>
>> I am hitting the following error when trying to add a trait to a
>> non-default collection or to view the non-default collection from the
>> collections list (http://genenetwork.org/collections/list). The
>> non-default collection includes traits from several different series in the
>> BXD family (phenotypes, hippocampal mRNA expression, liver mRNA expression).
>> Adding the same traits to the default collection seems to work.
>> ------------------------------
>>
>> GeneNetwork tux01:gene:2.11-rc2-HEAD-3e1f9f2b6
>> http://genenetwork.org/collections/view?uc_id=904b5144-5537-4d1f-a64c-adf2bffea68a
>> ( 8:30AM UTC Aug 23, 2022)
>> Traceback (most recent call last):
>> File
>> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
>> line 1513, in full_dispatch_request
>> rv = self.dispatch_request()
>> File
>> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py",
>> line 1499, in dispatch_request
>> return
>> self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
>> File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 286, in
>> view_collection
>> return render_template(
>> File
>> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py",
>> line 147, in render_template
>> return _render(
>> File
>> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py",
>> line 128, in _render
>> rv = template.render(context)
>> File
>> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py",
>> line 1304, in render
>> self.environment.handle_exception()
>> File
>> "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py",
>> line 925, in handle_exception
>> raise rewrite_traceback_stack(source=source)
>> File
>> "/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html",
>> line 1, in top-level template code
>> {% extends "base.html" %}
>> File "/home/gn2/production/gene/wqflask/wqflask/templates/base.html", line
>> 150, in top-level template code
>> {% block content %}
>> File
>> "/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html",
>> line 121, in block 'content'
>> data-trait-info="{{trait_info_str(this_trait)}}">
>> File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 230, in
>> trait_info_str
>> trait.name, trait.dataset.name, __trait_desc(trait), __symbol(trait),
>> File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 196, in
>> __trait_desc
>> return trt.description_display or "N/A"
>> AttributeError: 'GeneralTrait' object has no attribute
>> 'description_display'
>>
>> —
>> Reply to this email directly, view it on GitHub
>> <#723>, or unsubscribe
>> <https://github.com/notifications/unsubscribe-auth/AANQJGE4BQEHKQLFMIC66RTV2SE7DANCNFSM57KRK4WQ>
>> .
>> You are receiving this because you are subscribed to this thread.Message
>> ID: ***@***.***>
>>
>
>
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> #723 (comment)
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I am hitting the following error when trying to add a trait to a non-default collection or to view the non-default collection from the collections list (http://genenetwork.org/collections/list). The non-default collection includes traits from several different series in the BXD family (phenotypes, hippocampal mRNA expression, liver mRNA expression).
Adding the same traits to the default collection seems to work.
GeneNetwork tux01:gene:2.11-rc2-HEAD-3e1f9f2b6 http://genenetwork.org/collections/view?uc_id=904b5144-5537-4d1f-a64c-adf2bffea68a ( 8:30AM UTC Aug 23, 2022)
Traceback (most recent call last):
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py", line 1513, in full_dispatch_request
rv = self.dispatch_request()
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/app.py", line 1499, in dispatch_request
return self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 286, in view_collection
return render_template(
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py", line 147, in render_template
return _render(
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/flask/templating.py", line 128, in _render
rv = template.render(context)
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py", line 1304, in render
self.environment.handle_exception()
File "/usr/local/guix-profiles/gn-latest-20220122/lib/python3.9/site-packages/jinja2/environment.py", line 925, in handle_exception
raise rewrite_traceback_stack(source=source)
File "/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html", line 1, in top-level template code
{% extends "base.html" %}
File "/home/gn2/production/gene/wqflask/wqflask/templates/base.html", line 150, in top-level template code
{% block content %}
File "/home/gn2/production/gene/wqflask/wqflask/templates/collections/view.html", line 121, in block 'content'
data-trait-info="{{trait_info_str(this_trait)}}">
File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 230, in trait_info_str
trait.name, trait.dataset.name, __trait_desc(trait), __symbol(trait),
File "/home/gn2/production/gene/wqflask/wqflask/collect.py", line 196, in __trait_desc
return trt.description_display or "N/A"
AttributeError: 'GeneralTrait' object has no attribute 'description_display'
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