diff --git a/cortex/version.py b/cortex/version.py index 960f71b75..418df4796 100644 --- a/cortex/version.py +++ b/cortex/version.py @@ -17,7 +17,7 @@ # since the __version__ will be later automatically parsed by adding the git # commit hash # so valid versions will be 1.2.1.dev0, 1.4.dev0, etc -__version__ = '1.3.0.dev0' +__version__ = '1.2.3' __hardcoded_version__ = __version__ __full_version__ = __version__ diff --git a/docs/changelog.rst b/docs/changelog.rst deleted file mode 100644 index d2ab2922c..000000000 --- a/docs/changelog.rst +++ /dev/null @@ -1,98 +0,0 @@ -.. _changelog: - -Changelog -========== - - -1.2.2 ------- - -**Added** - -- Enhancements to ``cortex.export`` (`#394 `_) -- Add Blue/Purple/Red/Orange/Green colormap (`#395 `_) - -**Fixed** - -- Add more informative error in get_texture if inkscape is not installed (`#391 `_) -- Handle byte encoding with newer Python versions (`#397 `_) -- Allow vertex data to be passed to ``cortex.segment.cut_surface`` (`#399 `_) -- Set default imshow interpolation to nearest for ``composite.add_data`` (`#402 `_) - -1.2.1 ------ - -**Added** - -- Allow option to perform automatic alignment with Freesurfer's BBR for volumes without distortion correction (`5d7d6ca `_) -- Add ``line_lanczos`` to available mappers (`7721253 `_) -- Use Freesurfer's BBR by default for automatic alignment (`#384 `_) - - -**Fixed** - -- Parameter names for ``freesurfer.import_flat`` (`4371b26 `_) -- Fix left/right location of hemispheres for medial-pivot view (`c3b029e `_) -- Animation functions in ``webgl.view`` (`#372 `_) -- Various fixes to 2D volumes -- Installation with numpy < 1.2 (`#385 `_) -- String encoding in ``openctm.pyx`` (`6dc80db `_) - - -1.2.0 ------ - -**Added** - -- More functionality to import fMRIprep-processed data (`#315 `_) -- Function to rotate flatmaps (`f88a `_) -- Option to ignore NaNs when averaging across the thickness of cortex (`#355 `_) -- New views for ``cortex.export.plot_panels`` and passing of additional kwargs (`#361 `_, `#362 `_) -- Specify colorbar location with default positionings for quickflat (`#364 `_) -- Pass custom colors for ``VolumeRGB`` (`#366 `_) - - -**Fixed** - -- Bug with automatic creation of SVGs with ROIs (`#340 `_) -- Python 2/3 compatibilities for svgoverlay (`#352 `_) -- ``from_freesurfer``/``to_freesurfer`` handling of NIFTI images (`#354 `_) -- ROI label display parameters (`#356 `_) -- Improve documentation for install and demo (`#359 `_) -- Inkscape compatibility with newer versions (`#365 `_) -- Use correct contrast for automatic alignment with FreeSurfer's ``bbregister`` (`39d8 `_) - - -1.1.1 ------ - -**Fixed** - -- Installation fix for PyPi - -1.1.0 ------ - -**Added** - -- Added function ``cortex.utils.download_subject`` to download new subjects for pycortex from web URLs. This function allows users to download FreeSurfer's ``fsaverage`` surface, with a flatmap and ROI labels made by Mark Lescroart (`#344 `_) -- Vertex objects have a new method ``.map()`` that allows mapping from one surface to another (`#334 `_) -- Add ``cortex.freesurfer.get_mri_surf2surf_matrix`` to create a sparse matrix implementing the ``mri_surf2surf`` command (`#334 `_) -- Add function to plot and save 3D views and plot panels (`#337 `_) -- Axis object can be passed to ``quickshow`` (`#325 `_) -- Help menu for the 3D WebGL viewer can be accessed with a shortcut (`#319 `_, `#321 `_) -- New keyboard shortcuts (`list `_) -- Convenience function to import data preprocessed with fmriprep (`#301 `_) -- Added option to use FreeSurfer's BBR for automatic alignment and function to use Freeview for manual alignment - -**Fixed** - -- Fix ``DataView2D`` to allow plotting of 2D datasets with quickflat -- Fix ``VertexRGB`` and ``VolumeRGB`` when alpha is not set -- Allow arbitrary positioning of the colorbar with quickflat -- Make ``quickflat`` more robust to extraneous polygons (`#333 `_) -- Fix mouse behavior when unfold > 0.5 in WebGL viewer (`#330 `_) -- Sub surfaces fixes (`#307 `_) -- Firefox compatibility fixes (`#306 `_) -- Miscellaneous python 3 fixes - diff --git a/docs/conf.py b/docs/conf.py index 93cffcbea..4ea795243 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -70,7 +70,7 @@ # The short X.Y version. version = ".".join(cortex.__version__.split(".")[:2]) # The full version, including alpha/beta/rc tags. -release = cortex.__version__ +release = cortex.version.__hardcoded_version__ # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/index.rst b/docs/index.rst index a2cd43026..1c4d421ad 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -9,7 +9,7 @@ Pycortex is a software package for generating beautiful interactive 3D visualiza This documentation is still under development. Please report errors or bugs at https://github.com/gallantlab/pycortex/issues. -For a list of recent changes, please see the :ref:`changelog`. +For a list of recent changes, please see the `releases on GitHub `_. User Guide