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Genbank to GFF3 converter (Galaxy Version 1.0) dependency issue #294

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jennaj opened this issue Mar 18, 2020 · 0 comments
Open

Genbank to GFF3 converter (Galaxy Version 1.0) dependency issue #294

jennaj opened this issue Mar 18, 2020 · 0 comments
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functionality usegalaxy.org tool/dependency/function fix usegalaxy.org

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@jennaj
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jennaj commented Mar 18, 2020

Workaround for end-users: Please use Galaxy EU https://usegalaxy.eu for this functionality until the issue is resolved (closes).


bp_genbank2gff3-1 0

Metrics 100% of 158 runs failed over prior 28 days

Tests:

Error:

Dataset Error
An error occurred while running the tool toolshed.g2.bx.psu.edu/repos/iuc/bp_genbank2gff3/bp_genbank2gff3/1.0.

Error Details
Execution resulted in the following messages:

Fatal error: Exit code 2 ()
Tool generated the following standard error:

Can't locate Bio/Root/RootI.pm in @INC (you may need to install the Bio::Root::RootI module) (@INC contains: blib/lib /home/g2main/bioperl-live /cvmfs/main.galaxyproject.org/deps/_conda/envs/__perl-bioperl@1.6.924/lib/site_perl/5.26.2/x86_64-linux-thread-multi /cvmfs/main.galaxyproject.org/deps/_conda/envs/__perl-bioperl@1.6.924/lib/site_perl/5.26.2 /cvmfs/main.galaxyproject.org/deps/_conda/envs/__perl-bioperl@1.6.924/lib/5.26.2/x86_64-linux-thread-multi /cvmfs/main.galaxyproject.org/deps/_conda/envs/__perl-bioperl@1.6.924/lib/5.26.2 .) at /cvmfs/main.galaxyproject.org/deps/_conda/envs/__perl-bioperl@1.6.924/bin/bp_genbank2gff3.pl line 212.
BEGIN failed--compilation aborted at /cvmfs/main.galaxyproject.org/deps/_conda/envs/__perl-bioperl@1.6.924/bin/bp_genbank2gff3.pl line 212.
@jennaj jennaj added the functionality usegalaxy.org tool/dependency/function fix usegalaxy.org label Mar 18, 2020
@jennaj jennaj added this to Install Problem in Tool Lifecycle Mar 18, 2020
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Labels
functionality usegalaxy.org tool/dependency/function fix usegalaxy.org
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