{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":137376259,"defaultBranch":"master","name":"metaGEM","ownerLogin":"franciscozorrilla","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-06-14T15:26:05.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/35606471?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1705092327.0","currentOid":""},"activityList":{"items":[{"before":"5cf3f32d0e0541daedbe0388b175bd294306de5d","after":null,"ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2024-01-12T20:45:27.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"}},{"before":null,"after":"5cf3f32d0e0541daedbe0388b175bd294306de5d","ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2024-01-11T20:23:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"[bugfix] Update metaGEM.sh\n\nFix path to `config.yaml` file for `metaGEM.sh` script.\r\nAs mentioned in #150, the `metaGEM.sh` wrapper cannot find the config file in question, a bug that was introduced after restructuring the repo to be compliant with the snakemake workflow catalogue [rules](https://snakemake.github.io/snakemake-workflow-catalog/?rules=true).","shortMessageHtmlLink":"[bugfix] Update metaGEM.sh"}},{"before":"792ef0ad41145f191b23ab2fdf8fc80f4a0edc8f","after":null,"ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2024-01-03T14:27:21.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"}},{"before":"bb3af01ccd51e8ddd63924f46887680bf1096d3a","after":"978ae33afb71058e030473c330d699ac62668337","ref":"refs/heads/master","pushedAt":"2024-01-03T14:27:17.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Merge pull request #148 from franciscozorrilla/franciscozorrilla-patch-1\n\nCreate CITATION.bib","shortMessageHtmlLink":"Merge pull request #148 from franciscozorrilla/franciscozorrilla-patch-1"}},{"before":null,"after":"792ef0ad41145f191b23ab2fdf8fc80f4a0edc8f","ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2024-01-03T14:26:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Create CITATION.bib\n\nadd metaGEM publication bibtex file for citation purposes","shortMessageHtmlLink":"Create CITATION.bib"}},{"before":"b0957302aa4ebf22a3ab38a977d22b86fd152d1b","after":"145121d900b5f65baeca711a2ef6750ef9a4aac2","ref":"refs/heads/gh-pages","pushedAt":"2024-01-03T13:50:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update index.md","shortMessageHtmlLink":"Update index.md"}},{"before":"7903e55add3803b2d633b6f65ed13cc918489d5b","after":null,"ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2024-01-03T13:43:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"}},{"before":"cb099b7a557af8bddbd3b257670d263be3ac5a1f","after":"bb3af01ccd51e8ddd63924f46887680bf1096d3a","ref":"refs/heads/master","pushedAt":"2024-01-03T13:43:14.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Merge pull request #147 from franciscozorrilla/franciscozorrilla-patch-1\n\nUpdate README.md","shortMessageHtmlLink":"Merge pull request #147 from franciscozorrilla/franciscozorrilla-patch-1"}},{"before":null,"after":"7903e55add3803b2d633b6f65ed13cc918489d5b","ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2024-01-03T13:42:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update README.md\n\nAdd start history plot, as well as nature communications cheese publication. Remove stray badge linking to plastic paper preprint","shortMessageHtmlLink":"Update README.md"}},{"before":"e9ff00c00d7e4e38d44e8cf5408484f702a89811","after":"b0957302aa4ebf22a3ab38a977d22b86fd152d1b","ref":"refs/heads/gh-pages","pushedAt":"2023-08-12T10:32:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update index.md","shortMessageHtmlLink":"Update index.md"}},{"before":"b9488479a4b20f7a05fe34090eec294e89a6f423","after":"cb099b7a557af8bddbd3b257670d263be3ac5a1f","ref":"refs/heads/master","pushedAt":"2023-08-12T10:30:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"[skip CI] Update README.md\n\nreorganize badges","shortMessageHtmlLink":"[skip CI] Update README.md"}},{"before":"ed30e9c734fb8817013e85fbae6770c1031c0c28","after":"b9488479a4b20f7a05fe34090eec294e89a6f423","ref":"refs/heads/master","pushedAt":"2023-08-12T10:19:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"[skip CI] Update README.md\n\nadd badge specifying snakemake version used in workflow to main readme, #136","shortMessageHtmlLink":"[skip CI] Update README.md"}},{"before":"4dbee07dd62a7bfc6cd8561fb351b74061822a86","after":"ed30e9c734fb8817013e85fbae6770c1031c0c28","ref":"refs/heads/master","pushedAt":"2023-08-12T10:03:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update README.md","shortMessageHtmlLink":"Update README.md"}},{"before":"69e0629a5235285878e4e2d8a8a1dcd732949c08","after":"4dbee07dd62a7bfc6cd8561fb351b74061822a86","ref":"refs/heads/master","pushedAt":"2023-08-12T10:03:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update README.md\n\nimproved version documentation for snakemake #136","shortMessageHtmlLink":"Update README.md"}},{"before":"a19f9b2f2b5c5afa3b4917215740833670546ba0","after":"e9ff00c00d7e4e38d44e8cf5408484f702a89811","ref":"refs/heads/gh-pages","pushedAt":"2023-06-30T11:38:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update index.md","shortMessageHtmlLink":"Update index.md"}},{"before":"a42fd8941c2f54e8066d8c8e1cdc127402d900f6","after":null,"ref":"refs/heads/franciscozorrilla-patch-1-testPRtemp","pushedAt":"2023-06-30T11:34:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"}},{"before":null,"after":"a42fd8941c2f54e8066d8c8e1cdc127402d900f6","ref":"refs/heads/franciscozorrilla-patch-1-testPRtemp","pushedAt":"2023-06-30T11:33:21.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Create test.md\n\ntest pr template","shortMessageHtmlLink":"Create test.md"}},{"before":"cc295519e50cfbe7f8eb872c7b5115df9addc2bf","after":"69e0629a5235285878e4e2d8a8a1dcd732949c08","ref":"refs/heads/master","pushedAt":"2023-06-30T11:30:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Create PR.md","shortMessageHtmlLink":"Create PR.md"}},{"before":"7d2a666b47af994f2ee400126ae97dea3a8c70ed","after":"cc295519e50cfbe7f8eb872c7b5115df9addc2bf","ref":"refs/heads/master","pushedAt":"2023-06-30T10:47:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Create bug-.md","shortMessageHtmlLink":"Create bug-.md"}},{"before":"bc2a7bfd7d6cccd0db62fd3b7ba63f8f72dcab15","after":"7d2a666b47af994f2ee400126ae97dea3a8c70ed","ref":"refs/heads/master","pushedAt":"2023-06-30T10:46:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update issue templates","shortMessageHtmlLink":"Update issue templates"}},{"before":"e52c8ef853053c192546dd40652539d0c273aeac","after":"bc2a7bfd7d6cccd0db62fd3b7ba63f8f72dcab15","ref":"refs/heads/master","pushedAt":"2023-06-30T10:44:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Delete bug-.md","shortMessageHtmlLink":"Delete bug-.md"}},{"before":"57daf25fa0ecc89a67662d215a6075ea7bd41d27","after":"e52c8ef853053c192546dd40652539d0c273aeac","ref":"refs/heads/master","pushedAt":"2023-06-30T10:38:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Create bug-.md","shortMessageHtmlLink":"Create bug-.md"}},{"before":"8f7bc7493ec63e0d790df971085a04d624930415","after":"57daf25fa0ecc89a67662d215a6075ea7bd41d27","ref":"refs/heads/master","pushedAt":"2023-06-30T10:34:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update question-.md","shortMessageHtmlLink":"Update question-.md"}},{"before":"75f1bad7597277371b0b3ed27958f9fe7a6ac257","after":"8f7bc7493ec63e0d790df971085a04d624930415","ref":"refs/heads/master","pushedAt":"2023-06-30T10:33:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update question-.md","shortMessageHtmlLink":"Update question-.md"}},{"before":"5b8b3d3c208c9dcec28a0e970777e0d551c7f8e1","after":null,"ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2023-06-30T10:28:06.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"}},{"before":"1ff54135e3d42b6e5127d7b3c813535e96e1fdf6","after":"75f1bad7597277371b0b3ed27958f9fe7a6ac257","ref":"refs/heads/master","pushedAt":"2023-06-30T10:28:00.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Merge pull request #131 from franciscozorrilla/franciscozorrilla-patch-1\n\nCreate issue template","shortMessageHtmlLink":"Merge pull request #131 from franciscozorrilla/franciscozorrilla-patch-1"}},{"before":"1ff54135e3d42b6e5127d7b3c813535e96e1fdf6","after":"5b8b3d3c208c9dcec28a0e970777e0d551c7f8e1","ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2023-06-30T10:23:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Create issue template","shortMessageHtmlLink":"Create issue template"}},{"before":null,"after":"1ff54135e3d42b6e5127d7b3c813535e96e1fdf6","ref":"refs/heads/franciscozorrilla-patch-1","pushedAt":"2023-06-30T10:23:51.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Merge pull request #128 from codechenx/patch-1\n\nminor bugfix: crossMapParallel Snakefile rule","shortMessageHtmlLink":"Merge pull request #128 from codechenx/patch-1"}},{"before":null,"after":"c40a36c50c1c1c8de4e764d398aa6da6abdae29a","ref":"refs/heads/franciscozorrilla-gtdbtk-singlerun-patch","pushedAt":"2023-06-09T16:42:25.679Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"feature: support single batch gtdbtk classification\n\n# ๐Ÿฉป Single batch submission of GTDBTk-based taxonomic classification ๐Ÿš€\r\n\r\n## ๐Ÿ Snakefile tasks\r\n\r\n- [x] create GTDBTk_singlerun for single job submission of small number of genomes\r\n\r\n## ๐Ÿ”จ Additional modifications for full integration/support\r\n\r\n- [ ] metaGEM.sh: add options + support for new tasks\r\n- [ ] config.yaml: add params used in new tasks\r\n- [ ] config readme file\r\n- [ ] main readme file: text","shortMessageHtmlLink":"feature: support single batch gtdbtk classification"}},{"before":"ab7e8f66ff5ff7df8ea8c29b22a553a9dd146965","after":"725928f14fec20484e0bbb951ae7f0adf00fe6ef","ref":"refs/heads/franciscozorrilla-eggnog-mapper-patch","pushedAt":"2023-06-09T16:18:47.088Z","pushType":"push","commitsCount":1,"pusher":{"login":"franciscozorrilla","name":"Francisco Zorrilla","path":"/franciscozorrilla","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/35606471?s=80&v=4"},"commit":{"message":"Update Snakefile eggnog_mapper rule","shortMessageHtmlLink":"Update Snakefile eggnog_mapper rule"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD3o7CNwA","startCursor":null,"endCursor":null}},"title":"Activity ยท franciscozorrilla/metaGEM"}