diff --git a/tests/test_treeview/phylotree_visualization.py b/tests/test_treeview/phylotree_visualization.py index 1b00ce90..9a09eea5 100644 --- a/tests/test_treeview/phylotree_visualization.py +++ b/tests/test_treeview/phylotree_visualization.py @@ -31,8 +31,9 @@ def get_example_tree(): # Performs a tree reconciliation analysis gene_tree_nw = '((Dme_001,Dme_002),(((Cfa_001,Mms_001),((Hsa_001,Ptr_001),Mmu_001)),(Ptr_002,(Hsa_002,Mmu_002))));' species_tree_nw = "((((Hsa, Ptr), Mmu), (Mms, Cfa)), Dme);" - genetree = PhyloTree(gene_tree_nw) - sptree = PhyloTree(species_tree_nw) + naming_fn = lambda name: name[:3] + genetree = PhyloTree(gene_tree_nw, sp_naming_function=naming_fn) + sptree = PhyloTree(species_tree_nw, sp_naming_function=naming_fn) recon_tree, events = genetree.reconcile(sptree) recon_tree.link_to_alignment(alg) return recon_tree, TreeStyle()