From dbba02c10b13caa786181ef5d4dd80b33080dfc6 Mon Sep 17 00:00:00 2001 From: bioRoastery Date: Tue, 12 Mar 2024 13:29:24 +0900 Subject: [PATCH] [Update ncbiquery.py] fixing typo in NCBI url ftp.ncbi.nih.gov -> ftp.ncbi.nlm.nih.gov [ISSUE] the previous url does not work currently --- ete4/ncbi_taxonomy/ncbiquery.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ete4/ncbi_taxonomy/ncbiquery.py b/ete4/ncbi_taxonomy/ncbiquery.py index db946af7..67ffe35a 100644 --- a/ete4/ncbi_taxonomy/ncbiquery.py +++ b/ete4/ncbi_taxonomy/ncbiquery.py @@ -699,7 +699,7 @@ def update_db(dbfile, targz_file=None): def update_local_taxdump(fname=DEFAULT_TAXDUMP): """Update contents of file fname with taxdump.tar.gz from the NCBI site.""" - url = 'https://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz' + url = 'https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz' if not os.path.exists(fname): print(f'Downloading {fname} from {url} ...')