{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":615294714,"defaultBranch":"main","name":"ete-data","ownerLogin":"etetoolkit","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-03-17T11:27:16.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/16984099?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1680020437.8202891","currentOid":""},"activityList":{"items":[{"before":"50204d4ba707ccc9cec97820694d00e5113e5df5","after":"6935af72badc73d398f8f9715d68fb1e5fa20a5e","ref":"refs/heads/main","pushedAt":"2024-06-03T07:28:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"cosmetics","shortMessageHtmlLink":"cosmetics"}},{"before":"00a265dcb3e8588fc1a25dce2195fbdcd1d9b0b2","after":"50204d4ba707ccc9cec97820694d00e5113e5df5","ref":"refs/heads/main","pushedAt":"2024-05-31T19:21:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Update annot_tree.nw.\n\nSo it coincides with whatever version of the ncbi database was being\nused when we wrote the tests.","shortMessageHtmlLink":"Update annot_tree.nw."}},{"before":"d68baef3b4eaf6dd2e88e38a033919c5dd37efcd","after":"00a265dcb3e8588fc1a25dce2195fbdcd1d9b0b2","ref":"refs/heads/main","pushedAt":"2024-05-31T19:16:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"+ P53.faa.nw used in ete test_orthologs_group_delineation.py","shortMessageHtmlLink":"+ P53.faa.nw used in ete test_orthologs_group_delineation.py"}},{"before":"b76e62a3f3c29e2d92bc6378b236f136882b7244","after":"d68baef3b4eaf6dd2e88e38a033919c5dd37efcd","ref":"refs/heads/main","pushedAt":"2024-05-31T19:12:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Create ncbi taxa dump files with all the ids needed in tests/test_orthologs_group_delineation.py too.","shortMessageHtmlLink":"Create ncbi taxa dump files with all the ids needed in tests/test_ort…"}},{"before":"07e6b59e3fce9396d02169db2a7cfc60be369f72","after":"b76e62a3f3c29e2d92bc6378b236f136882b7244","ref":"refs/heads/main","pushedAt":"2024-05-28T08:04:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"generate_taxdump_tests.py: cosmetics","shortMessageHtmlLink":"generate_taxdump_tests.py: cosmetics"}},{"before":"c31203d6689dc79ce3beec6d9fc9ccf5556d9103","after":"07e6b59e3fce9396d02169db2a7cfc60be369f72","ref":"refs/heads/main","pushedAt":"2024-05-28T07:26:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"generate_taxdump_tests.py: cosmetics","shortMessageHtmlLink":"generate_taxdump_tests.py: cosmetics"}},{"before":"fcc983dc7453bf6fe874d460e95a4da11d3cd17c","after":"c31203d6689dc79ce3beec6d9fc9ccf5556d9103","ref":"refs/heads/main","pushedAt":"2024-05-28T07:13:22.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"generate_taxdump_tests.py: cosmetics","shortMessageHtmlLink":"generate_taxdump_tests.py: cosmetics"}},{"before":"c82e5de0e74b4a30c6ba93c9fc7d7ef8b6242b2a","after":"fcc983dc7453bf6fe874d460e95a4da11d3cd17c","ref":"refs/heads/main","pushedAt":"2024-05-27T22:39:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"cosmetics","shortMessageHtmlLink":"cosmetics"}},{"before":"1537cd5cb60a89afa2768be9ea66182c9c598237","after":"c82e5de0e74b4a30c6ba93c9fc7d7ef8b6242b2a","ref":"refs/heads/main","pushedAt":"2024-05-27T22:25:21.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"taxdump_tests.tar.gz: Update with nicer order of taxa ids.","shortMessageHtmlLink":"taxdump_tests.tar.gz: Update with nicer order of taxa ids."}},{"before":"8baeb84b2a97f9cbac9f3e0e84ad2c52b9fcde20","after":"1537cd5cb60a89afa2768be9ea66182c9c598237","ref":"refs/heads/main","pushedAt":"2024-05-27T21:13:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"+ generate_taxdump_tests.py and taxdump_tests.tar.gz for test taxa dump files.\n\nThe script generate_taxdump_tests.py can create taxdump_tests.tar.gz\nwhich we will use instead of the full taxdump.tar.gz from the NCBI\nfor the tests in ete.\n\nThis way we will have to download much less data for tests, and they\nwill be faster too.","shortMessageHtmlLink":"+ generate_taxdump_tests.py and taxdump_tests.tar.gz for test taxa du…"}},{"before":"dd6c5c25e62f40bcb3e1af8ca68ed0c2675178e5","after":"8baeb84b2a97f9cbac9f3e0e84ad2c52b9fcde20","ref":"refs/heads/main","pushedAt":"2024-05-22T10:51:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Change name of some gtdbdump files that were not consistent.\n\nThey just had an extra \"r\" (for \"release\") in their names.","shortMessageHtmlLink":"Change name of some gtdbdump files that were not consistent."}},{"before":"0093d80c77db1a2b07a31aabd099ef3967589316","after":"dd6c5c25e62f40bcb3e1af8ca68ed0c2675178e5","ref":"refs/heads/main","pushedAt":"2024-04-24T12:53:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"cosmetics","shortMessageHtmlLink":"cosmetics"}},{"before":"139ae6a1229cf8b063ed6667fb39e27895f82d33","after":"0093d80c77db1a2b07a31aabd099ef3967589316","ref":"refs/heads/main","pushedAt":"2024-04-24T12:51:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"cosmetics","shortMessageHtmlLink":"cosmetics"}},{"before":"02bcf0744dfbc7f11e665d2d7ab44f3f9f714cf9","after":"139ae6a1229cf8b063ed6667fb39e27895f82d33","ref":"refs/heads/main","pushedAt":"2024-04-24T12:46:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"cosmetics","shortMessageHtmlLink":"cosmetics"}},{"before":"64c8a280853b5a50cbe51e4b3f973d0f67aa162d","after":"02bcf0744dfbc7f11e665d2d7ab44f3f9f714cf9","ref":"refs/heads/main","pushedAt":"2024-04-24T12:45:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Move the remaining gtdb information to gtdb_taxonomy/README.md.","shortMessageHtmlLink":"Move the remaining gtdb information to gtdb_taxonomy/README.md."}},{"before":"ced5c4d9ae5750228cd7767cdaceb0722893f07e","after":"64c8a280853b5a50cbe51e4b3f973d0f67aa162d","ref":"refs/heads/main","pushedAt":"2024-04-24T11:18:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"check_gtdb_latest.py: Fix it so it works with the latest release of gtdb.\n\nThey changed the names of the files in MD5SUM.txt, and it is quite messy.\n\nAt least this script works for now.","shortMessageHtmlLink":"check_gtdb_latest.py: Fix it so it works with the latest release of g…"}},{"before":"1b4459ea8ac2a83febefd6e5630d61b358dad84f","after":"ced5c4d9ae5750228cd7767cdaceb0722893f07e","ref":"refs/heads/main","pushedAt":"2024-04-24T10:19:43.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"README.md: Fix tar call for some systems.\n\n`tar -cfz ...` misbehaves in some old systems. We change it to `tar -czf ...`\nwhich works in all (as far as I know!).","shortMessageHtmlLink":"README.md: Fix tar call for some systems."}},{"before":"88f0827c8e4072f89f50dc5faa7b5084d170ffc4","after":"1b4459ea8ac2a83febefd6e5630d61b358dad84f","ref":"refs/heads/main","pushedAt":"2024-04-24T09:15:51.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Merge pull request #2 from dengzq1234/main\n\nadd description of using gtdb dump file","shortMessageHtmlLink":"Merge pull request #2 from dengzq1234/main"}},{"before":"d29f55ffb3da4caa91e1f486aeb13935d4b518c0","after":"88f0827c8e4072f89f50dc5faa7b5084d170ffc4","ref":"refs/heads/main","pushedAt":"2024-01-19T15:29:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Update test result annot_tree.nw.\n\nIt now corresponds to the new Tree.resolve_polytomy().","shortMessageHtmlLink":"Update test result annot_tree.nw."}},{"before":"b8ac56d1436b7bd4a8360ddc837026fe86fdd2e0","after":"d29f55ffb3da4caa91e1f486aeb13935d4b518c0","ref":"refs/heads/main","pushedAt":"2023-10-31T14:26:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"cosmetics","shortMessageHtmlLink":"cosmetics"}},{"before":"95bcd07c873b36947bf5b51246fd00635b0f9897","after":"b8ac56d1436b7bd4a8360ddc837026fe86fdd2e0","ref":"refs/heads/main","pushedAt":"2023-10-31T14:08:24.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Add GTDB original taxonomy files and script to check when updates are needed.","shortMessageHtmlLink":"Add GTDB original taxonomy files and script to check when updates are…"}},{"before":"d6aea93c55a8507f03614461077b7f3a0be6f8cb","after":"95bcd07c873b36947bf5b51246fd00635b0f9897","ref":"refs/heads/main","pushedAt":"2023-10-30T10:42:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"cosmetics","shortMessageHtmlLink":"cosmetics"}},{"before":"cde445555213652515b12a076f43270a892e6ad7","after":"d6aea93c55a8507f03614461077b7f3a0be6f8cb","ref":"refs/heads/main","pushedAt":"2023-10-30T10:34:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"README.md: Add info on how to create the gtdbdump.tar.gz files.","shortMessageHtmlLink":"README.md: Add info on how to create the gtdbdump.tar.gz files."}},{"before":"3782df58cc240ddaa64cd3c23cf0f71d8f03d88d","after":"cde445555213652515b12a076f43270a892e6ad7","ref":"refs/heads/main","pushedAt":"2023-10-30T09:38:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Remove unused plk files from gtdb_taxonomy.","shortMessageHtmlLink":"Remove unused plk files from gtdb_taxonomy."}},{"before":"ba0ee9dee643da966c8ef5c77e4799449ddd288c","after":"3782df58cc240ddaa64cd3c23cf0f71d8f03d88d","ref":"refs/heads/main","pushedAt":"2023-10-30T09:35:44.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Merge pull request #1 from dengzq1234/main\n\nupdate GTDB database release 214 and release latest","shortMessageHtmlLink":"Merge pull request #1 from dengzq1234/main"}},{"before":"36c809c6ac391eff58c0468ec19b2b98720211fc","after":"ba0ee9dee643da966c8ef5c77e4799449ddd288c","ref":"refs/heads/main","pushedAt":"2023-07-11T11:57:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"annot_tree.nw updated so it works with the new ete4 parser.","shortMessageHtmlLink":"annot_tree.nw updated so it works with the new ete4 parser."}},{"before":"734b9222ee5095e8c2fb760c546b7ad372c269fd","after":"36c809c6ac391eff58c0468ec19b2b98720211fc","ref":"refs/heads/main","pushedAt":"2023-04-05T23:02:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"+ annot_tree.nw test result data.","shortMessageHtmlLink":"+ annot_tree.nw test result data."}},{"before":"f8a254c123ba821d6120f9fc67663ecbbe3624d1","after":"734b9222ee5095e8c2fb760c546b7ad372c269fd","ref":"refs/heads/main","pushedAt":"2023-04-04T11:43:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Add old tutorial as ete2_tutorial.pdf","shortMessageHtmlLink":"Add old tutorial as ete2_tutorial.pdf"}},{"before":"9c194b2dea36c3f6f64280a161093e43f220a23b","after":"f8a254c123ba821d6120f9fc67663ecbbe3624d1","ref":"refs/heads/main","pushedAt":"2023-04-04T11:32:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"Add big example data files for phyloxml.\n\nThey were in the old ete repository in:\n examples/phyloxml/ncbi_taxonomy_metazoa.xml.bz2\n examples/phyloxml/tol_life_on_earth.xml.bz2","shortMessageHtmlLink":"Add big example data files for phyloxml."}},{"before":"f3ad38e8f525d43c408d35439353b0a792b93ecf","after":"9c194b2dea36c3f6f64280a161093e43f220a23b","ref":"refs/heads/main","pushedAt":"2023-03-31T12:52:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jordibc","name":"Jordi Burguet-Castell","path":"/jordibc","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1568405?s=80&v=4"},"commit":{"message":"+ big json files with color schemes for some layouts.","shortMessageHtmlLink":"+ big json files with color schemes for some layouts."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEWqL8BAA","startCursor":null,"endCursor":null}},"title":"Activity · etetoolkit/ete-data"}