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Release 1.2 "mCherry"

  • Huge improvements to documentation. Head over to https://cytoflow.readthedocs.io for tutorials, HOWTOs, explainers, and reference documentation.
  • Implemented an "experiment browser" to help keep track of channels, conditions, and statistics in the GUI.
  • Add an FCS export "view". Save calibrated or compensated data back to FCS files for analysis with other tools.
  • Better support for high-DPI displays.
  • Major GUI code restructure to separate the model from the view and controller. As a result, cytoflow only creates one icon on the Mac taskbar now!
  • Fix a number of bugs, including one high-profile bug where the GUI would crash on saving.
  • Update dependencies to current versions.

Release 1.1 "tdTomato"

Maintenance release.

  • Update dependencies to current versions.
  • Move CI infrastructure to GitHub Actions.
  • Significant re-work of the GUI unit tests

Release 1.0

Cytoflow's 1.0 release! This marks the state at which Cytoflow is, for all intents and purposes, "feature-complete." Major additions in this release include:

  • Update all dependent libraries to their latest versions. Notably, this updates matplotlib to 3.0.2 and PyQt to 5.9.2.
  • Overhauled the experimental setup dialog, including the ability to import CSV files with filenames and experimental conditions.
  • Packaging differences make program startup much, much faster. Also, a proper Windows installer!

Release 0.5 "GFP"

  • Significant re-work of summary statistics generation and plotting
  • Tighten down TASBE calibrated cytometry
  • MANY many bug fixes, both in modules and GUI

Release 0.4.1

  • A GUI for the calibrated cytometry tools!
  • Bleedthrough compensation (both linear and piecewise-linear)
  • Bead calibration
  • Autofluorescence correction
  • Color mapping
  • Keep the same scales on plots in the same x, y facets
  • Significant under-the-hood re-wiring
  • Other bug-fixes

Release 0.3.2

  • Fix some Logicle crashers
  • Add error bars to barplot, stats views
  • Use FastLogicle -- it's faster!

Release 0.3.0

Public beta!

  • The point-and-click GUI is not only functional but useful. Serious restructuring behind the scenes, including a multi-process model to keep the GUI responsive.
  • More operations (GMMs) and views (2D histogram, 1 and 2D KDEs, violin plots.) *Lots (lots) of packaging work. One-click bundles and distribution infrastructure.

Release 0.2.0

A developer's beta!

  • Add a public API to Experiment to add conditions and channels.
  • Add scaling options to views, data-driven modules
  • Add 1D and 2D gaussian mixture models
  • Clean up import mess
  • Linear bleedthrough module, quad gate