LAMMPS polymers in Taylor-Green vortex. Movie on YouTube produced with ParaView.
Install LAMMPS serial library
git clone git@github.com:lammps/lammps.git
cd lammps/src
make yes-MOLECULE serial -j4 'CCFLAGS = -O3 -g -fPIC'
mkdir -p "$HOME"/.local/lib "$HOME"/.local/include
cp STUBS/libmpi_stubs.a liblammps_serial.a "$HOME"/.local/lib/
cp library.h "$HOME"/.local/include/
LAMMPS configuration is in.polymers, aphros configuration is in std.conf.
To run the example and generate PPM images,
make run
Convert lammps dumps to VTK
awk -f dump2vtk input *.dump