.pre-commit-config.yaml

---
exclude: |
  (?x)^(
  demos/renaming/spm_2_bids_filenames.ipynb
  | demos/MoAE/moae_01_bids_app.ipynb
  )$

repos:
- repo: local

  hooks:
  - id: mh_style
    name: mh_style
    entry: mh_style
    args: [--process-slx, --fix]
    files: ^(.*\.(m|slx))$
    language: python
    additional_dependencies: [miss_hit_core]

  - id: mh_metric
    name: mh_metric
    entry: mh_metric
    args: [--ci]
    files: ^(.*\.(m|slx))$
    language: python
    additional_dependencies: [miss_hit_core]

  - id: mh_lint
    name: mh_lint
    entry: mh_lint
    files: ^(.*\.(m|slx))$
    language: python
    additional_dependencies: [miss_hit]

- repo: https://github.com/pre-commit/pre-commit-hooks
  rev: v4.6.0
  hooks:
  - id: trailing-whitespace
  - id: end-of-file-fixer
  - id: check-yaml
  - id: check-json
  - id: check-added-large-files
  - id: pretty-format-json
    args: [--autofix, --no-sort-keys]

- repo: https://github.com/pre-commit/pygrep-hooks
  rev: v1.10.0
  hooks:
  - id: rst-backticks
  - id: rst-inline-touching-normal

- repo: https://github.com/pycqa/isort
  rev: 5.13.2
  hooks:
  - id: isort
    args: [--profile, black]

- repo: https://github.com/psf/black
  rev: 24.4.2
  hooks:
  - id: black
    args: [--config=pyproject.toml]

- repo: https://github.com/asottile/pyupgrade
  rev: v3.15.2
  hooks:
  - id: pyupgrade
    args: [--py38-plus]

- repo: https://github.com/pycqa/flake8
  rev: 7.0.0
  hooks:
  - id: flake8
    exclude: tests_.*.py|version.*.py|setup.py

- repo: https://github.com/ikamensh/flynt/
  rev: 1.0.1
  hooks:
  - id: flynt

- repo: https://github.com/pre-commit/mirrors-mypy
  rev: v1.10.0
  hooks:
  - id: mypy
    additional_dependencies: [types-all]
    files: bidspm
    args: [--config-file, pyproject.toml]

- repo: https://github.com/MarcoGorelli/auto-walrus
  rev: 0.3.4
  hooks:
  - id: auto-walrus

- repo: https://github.com/jumanjihouse/pre-commit-hook-yamlfmt
  rev: 0.2.3
  hooks:
  - id: yamlfmt
    args: [--mapping, '2', --sequence, '2', --offset, '0']

- repo: https://github.com/hadolint/hadolint
  rev: v2.13.0-beta
  hooks:
  - id: hadolint-docker
    name: Lint Dockerfiles
    description: Runs hadolint Docker image to lint Dockerfiles
    language: docker_image
    types: [dockerfile]
    entry: ghcr.io/hadolint/hadolint hadolint

- repo: https://github.com/codespell-project/codespell
  rev: v2.3.0
  hooks:
  - id: codespell

ci:
  skip: [hadolint-docker]