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Multiple Tools (Documentation): Format of --arguments_file #8722

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J-Moravec opened this issue Mar 7, 2024 · 0 comments
Open

Multiple Tools (Documentation): Format of --arguments_file #8722

J-Moravec opened this issue Mar 7, 2024 · 0 comments

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@J-Moravec
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J-Moravec commented Mar 7, 2024

--argument_file is a parameter shared by many tools.

It allows providing arguments in a file instead on a command line, which is very convenient when e.g., merging multiple files using CombineGVCFs.

And yet, the format of the argument_file is not mentioned anywhere.

Compare with the --sample-name-map from GenomicDBImport which mentions tab-delimited format for this file.
Some guidance like this for the argument_file would be useful.

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