{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":27452807,"defaultBranch":"master","name":"gatk","ownerLogin":"broadinstitute","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-12-02T20:50:36.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/393552?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717702707.0","currentOid":""},"activityList":{"items":[{"before":"2a420e483bfcf69ca4ac2730b0e6b2865ddca8c8","after":"c5dd53120dba0655c4b2083d0352150626bc7d8c","ref":"refs/heads/gc_FastaAlternateReferenceMaker_keep_contig_names","pushedAt":"2024-06-06T20:04:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gokalpcelik","name":"Gökalp Çelik","path":"/gokalpcelik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37572619?s=80&v=4"},"commit":{"message":"Add keep-contig-names param","shortMessageHtmlLink":"Add keep-contig-names param"}},{"before":"b76feeca20043e8bdc7f83ad5275bac3b6250882","after":"adbffd8d2875f4ccbb7c80e17197dcbfe49bcb4f","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS_EchoCallsetVersion","pushedAt":"2024-06-06T20:04:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Remove branch from .dockstore.yml","shortMessageHtmlLink":"Remove branch from .dockstore.yml"}},{"before":null,"after":"2a420e483bfcf69ca4ac2730b0e6b2865ddca8c8","ref":"refs/heads/gc_FastaAlternateReferenceMaker_keep_contig_names","pushedAt":"2024-06-06T19:38:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"gokalpcelik","name":"Gökalp Çelik","path":"/gokalpcelik","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/37572619?s=80&v=4"},"commit":{"message":"Permutect dataset engine outputs contig and read group indices, not names (#8860)","shortMessageHtmlLink":"Permutect dataset engine outputs contig and read group indices, not n…"}},{"before":"803550c9c64d124d0dce3ede36a1489fef62952f","after":"b76feeca20043e8bdc7f83ad5275bac3b6250882","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS_EchoCallsetVersion","pushedAt":"2024-06-06T18:26:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Add branch to .dockstore.yml for testing.","shortMessageHtmlLink":"Add branch to .dockstore.yml for testing."}},{"before":null,"after":"803550c9c64d124d0dce3ede36a1489fef62952f","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS_EchoCallsetVersion","pushedAt":"2024-06-06T18:25:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Update docker to latest changes","shortMessageHtmlLink":"Update docker to latest changes"}},{"before":"972deb8053cacf097ea6a159f128ee4792ac557e","after":null,"ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-06T18:19:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"}},{"before":"20cdd9b0e99963a0ad894aafec6118b4335a7af4","after":"8e7053f3f3fdd16513f747a98bbc69f6366f6ecd","ref":"refs/heads/ah_var_store","pushedAt":"2024-06-06T18:19:08.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"VS-430 Remove YNG status from vds (#8861)\n\n* remove the field 'yng_status' from the variant_data as_vqsr status dict of structs.","shortMessageHtmlLink":"VS-430 Remove YNG status from vds (#8861)"}},{"before":"bdc66bbd7a46e6152a88df021964429b55de3c69","after":"972deb8053cacf097ea6a159f128ee4792ac557e","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-06T18:18:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Remove branches from .dockstore.yml","shortMessageHtmlLink":"Remove branches from .dockstore.yml"}},{"before":"69cb3c4fb0e9b6a7d5d32a523dde88f554b6a982","after":"6dde0093e4b1201dfc22d62c4321bcd404f899a2","ref":"refs/heads/gg_VS-1395_Have_CreateVATFromVDS_OptionallyTakeSitesOnlyVCF","pushedAt":"2024-06-06T17:43:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Remove debugging comment.","shortMessageHtmlLink":"Remove debugging comment."}},{"before":"e079f7d869acda1a7e568a0efe84de2da99101cd","after":"69cb3c4fb0e9b6a7d5d32a523dde88f554b6a982","ref":"refs/heads/gg_VS-1395_Have_CreateVATFromVDS_OptionallyTakeSitesOnlyVCF","pushedAt":"2024-06-06T15:50:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Change naming of validation task","shortMessageHtmlLink":"Change naming of validation task"}},{"before":"9f79d102018740b78cd210f0ca68ba9cfa1caad7","after":"e079f7d869acda1a7e568a0efe84de2da99101cd","ref":"refs/heads/gg_VS-1395_Have_CreateVATFromVDS_OptionallyTakeSitesOnlyVCF","pushedAt":"2024-06-06T15:40:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Fix input validation","shortMessageHtmlLink":"Fix input validation"}},{"before":"41d867a2ae1df8f01c20c976f250592186461274","after":"9f79d102018740b78cd210f0ca68ba9cfa1caad7","ref":"refs/heads/gg_VS-1395_Have_CreateVATFromVDS_OptionallyTakeSitesOnlyVCF","pushedAt":"2024-06-06T15:29:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Fix for updated input validation","shortMessageHtmlLink":"Fix for updated input validation"}},{"before":"d317a57839d04052b5041d41da5f07c8a8945b6c","after":"41d867a2ae1df8f01c20c976f250592186461274","ref":"refs/heads/gg_VS-1395_Have_CreateVATFromVDS_OptionallyTakeSitesOnlyVCF","pushedAt":"2024-06-06T15:21:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Add more input validation","shortMessageHtmlLink":"Add more input validation"}},{"before":"b351cc0b61b9574381313a57d9d2c596047fdda5","after":"bdc66bbd7a46e6152a88df021964429b55de3c69","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-05T01:07:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Update docker for formatting change","shortMessageHtmlLink":"Update docker for formatting change"}},{"before":"134501f7fe57de183345c9f2646a9fecfc504055","after":"b351cc0b61b9574381313a57d9d2c596047fdda5","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-05T01:03:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Remove debugging comments","shortMessageHtmlLink":"Remove debugging comments"}},{"before":"02ef6ec59b2609b515fa5f714b0f622bc0a075f3","after":"134501f7fe57de183345c9f2646a9fecfc504055","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T20:42:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Push the latest docker","shortMessageHtmlLink":"Push the latest docker"}},{"before":"831ff6a258ccd15cb6698b64879535a2f5336b14","after":"1ad11dfb3839ef9c3205e6df811f38a94429a1ee","ref":"refs/heads/jts_funcotator_extract_transcripts_from_reference","pushedAt":"2024-06-04T20:42:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jonn-smith","name":"Jonn Smith","path":"/jonn-smith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11667487?s=80&v=4"},"commit":{"message":"Changed code to pull coding sequence from reference.\n\nNext step is to remove the required transcript files.","shortMessageHtmlLink":"Changed code to pull coding sequence from reference."}},{"before":"c77da55d8d5f86c6b2ce7991afd82687ee5b6417","after":"02ef6ec59b2609b515fa5f714b0f622bc0a075f3","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T20:40:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"A better way to drop 'yng_status'","shortMessageHtmlLink":"A better way to drop 'yng_status'"}},{"before":"5a5f25a2c645b68876dcb2eccafa229a4e2d5775","after":"1c746d8268c9c07cf7344fcd5b5b8decb2ea9458","ref":"refs/heads/ms_mix_ploidy","pushedAt":"2024-06-04T20:20:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"meganshand","name":null,"path":"/meganshand","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13020550?s=80&v=4"},"commit":{"message":"fixing tests","shortMessageHtmlLink":"fixing tests"}},{"before":"20da08976d6abbb006a37f924fe966f803ef071b","after":"c77da55d8d5f86c6b2ce7991afd82687ee5b6417","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T20:02:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Push the updated docker","shortMessageHtmlLink":"Push the updated docker"}},{"before":"340f8a335532fbf76ae3972a8acc32b45249dfa6","after":"20da08976d6abbb006a37f924fe966f803ef071b","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T20:00:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Go with approach 1","shortMessageHtmlLink":"Go with approach 1"}},{"before":"c6548c820c92e97e49d9b9685a35175961bbdbf4","after":"340f8a335532fbf76ae3972a8acc32b45249dfa6","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T19:55:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Comment for debugging.","shortMessageHtmlLink":"Comment for debugging."}},{"before":"97a2693ccfc5630d78516b5476764505ea5739d0","after":"c6548c820c92e97e49d9b9685a35175961bbdbf4","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T19:48:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Comment for debugging.","shortMessageHtmlLink":"Comment for debugging."}},{"before":"a8a2403e09f1569743bac682e9eea2d43e92abbb","after":"97a2693ccfc5630d78516b5476764505ea5739d0","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T19:47:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Updated the docker for the typo","shortMessageHtmlLink":"Updated the docker for the typo"}},{"before":"c61e3fb406e6e8d09b39ab9cd980d5af504e68a7","after":"a8a2403e09f1569743bac682e9eea2d43e92abbb","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T19:45:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Fix a typo","shortMessageHtmlLink":"Fix a typo"}},{"before":"d17ff2ec3f1f835eadff608e1e02f8a223323a04","after":"831ff6a258ccd15cb6698b64879535a2f5336b14","ref":"refs/heads/jts_funcotator_extract_transcripts_from_reference","pushedAt":"2024-06-04T19:30:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jonn-smith","name":"Jonn Smith","path":"/jonn-smith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11667487?s=80&v=4"},"commit":{"message":"Added tests.","shortMessageHtmlLink":"Added tests."}},{"before":"ef9121ebfb3cb6e1ac30cb14b5f2f9d96059c343","after":"c61e3fb406e6e8d09b39ab9cd980d5af504e68a7","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T19:18:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Add branch to .dockstore.yml for integration testing IN THE RIGHT PLACE (again).","shortMessageHtmlLink":"Add branch to .dockstore.yml for integration testing IN THE RIGHT PLA…"}},{"before":"c66ebe784d0dc70116cbecb02066c2d631b525db","after":"ef9121ebfb3cb6e1ac30cb14b5f2f9d96059c343","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T19:02:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Add branch to .dockstore.yml for integration testing IN THE RIGHT PLACE.","shortMessageHtmlLink":"Add branch to .dockstore.yml for integration testing IN THE RIGHT PLACE."}},{"before":"a07e2cf60061ff60f7e8b395a258b9c4f1fe9c6d","after":"c66ebe784d0dc70116cbecb02066c2d631b525db","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T18:59:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Add branch to .dockstore.yml for integration testing.","shortMessageHtmlLink":"Add branch to .dockstore.yml for integration testing."}},{"before":"2b84618e87e72cecfeb296a20997d4db8c149dee","after":"a07e2cf60061ff60f7e8b395a258b9c4f1fe9c6d","ref":"refs/heads/gg_VS-430_RemoveYNGStatus_From_VDS","pushedAt":"2024-06-04T18:26:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"gbggrant","name":"George Grant","path":"/gbggrant","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4129081?s=80&v=4"},"commit":{"message":"Remove debugging comment","shortMessageHtmlLink":"Remove debugging comment"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXpOm8gA","startCursor":null,"endCursor":null}},"title":"Activity · broadinstitute/gatk"}