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threshold output to indicate how many bases in each region are covered at the given thresholds. #176

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asmlgkj opened this issue Apr 25, 2022 · 0 comments

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@asmlgkj
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asmlgkj commented Apr 25, 2022

#174
sorry for a new issue here, because I can not comment at a close issue.
threshold output to indicate how many bases in each region are covered at the given thresholds.
image
panel_total_bases is calculated by fastp, and column 5 6 7 names is the 0.1 meandepth, 0.2 meandepth, 0.5 meandepth

uniform_01 = df.iloc[:, 4].sum() / panel_total_bases
uniform_02 = df.iloc[:, 5].sum() / panel_total_bases
uniform_05 = df.iloc[:, 6].sum() / panel_total_bases

do you think this is not I want

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