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Error cannot open file #263

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akhwela opened this issue Jun 5, 2023 · 1 comment
Open

Error cannot open file #263

akhwela opened this issue Jun 5, 2023 · 1 comment

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@akhwela
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akhwela commented Jun 5, 2023

I am trying to taxonomically classify my reads using only the viral database. This is the code I used:

kaiju -t /home/akhwela/kaijudb/viruses/nodes.dmp -f home/akhwela/kaijudb/viruses/kaiju_db_viruses.fmi
-i home/akhwela/lustre/Data/noSheepQCRead/*.fastq.gz

I keep getting errors that specify the input files cannot be opened sometime it also says the nodes.dmp file cannot be opened. I have tried to run the code on a single input file but it still give the same error please assist.

@pmenzel
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pmenzel commented Jul 2, 2023

Check your path of the fastq files, you miss the '/' before 'home'

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