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Identifying unclassified? #238

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shaylashahar opened this issue Sep 9, 2022 · 4 comments
Open

Identifying unclassified? #238

shaylashahar opened this issue Sep 9, 2022 · 4 comments

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@shaylashahar
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Anyone know how to access what lives in the "unclassified" section of the output table?
@pmenzel
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pmenzel commented Sep 12, 2022

Well, kaiju didn't find a match in the database for those sequences, therefore they are unclassified and there is really no further info available.

@shaylashahar
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I understand, but can I access which sequences didn't find a match?

@pmenzel
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pmenzel commented Sep 12, 2022 •
edited

unclassified sequences have a U in the first column of the kaiju output tsv file.

@shaylashahar
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Decided to look at the unidentified again. How can I access the actual sequences? I only see a sequence identifier.

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@pmenzel @shaylashahar