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sambamba-sort: index [1] exceeds array of length 1 #516

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Bio-Quest opened this issue Apr 18, 2024 · 0 comments

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bug

Bio-Quest commented Apr 18, 2024 •

edited

Only bug reports!

sambamba view --with-header --format bam --sam-input --nthreads 48 A.sam | \
sambamba sort --compression-level 9 --nthreads 48 --tmpdir ./temp --out A.bam

Describe the bug

sambamba-sort: index [1] exceeds array of length 1

To Reproduce

Steps to reproduce the behavior:
sambamba version 1.0.0

Bio-Quest added the bug label

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