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Feature request: fixmate like samtools #489

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kaji331 opened this issue May 24, 2022 · 1 comment
Open

Feature request: fixmate like samtools #489

kaji331 opened this issue May 24, 2022 · 1 comment
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enhancement help wanted

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@kaji331
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kaji331 commented May 24, 2022

after bwa mem, the samtools suggested fixmate/sort command before mark duplicates. Is any way to implement those by sambamba now or add fixmate in sambamba in future? Thanks!
@pjotrp
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pjotrp commented Jun 1, 2022

Feel free to add the feature.

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