{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":54746262,"defaultBranch":"main","name":"miga","ownerLogin":"bio-miga","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-03-25T20:39:37.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/15471824?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717612791.0","currentOid":""},"activityList":{"items":[{"before":"41430a16587f20d28a54ad0d5e95d65574e33bcb","after":"6829496d44948608869ba8ed81ba5c060e970772","ref":"refs/heads/main","pushedAt":"2024-06-05T18:34:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Reduce \"large\" collection threshold in subclades","shortMessageHtmlLink":"Reduce \"large\" collection threshold in subclades"}},{"before":"1b7fd8429a2e541401b65e2694b52dfdeeb4f844","after":"41430a16587f20d28a54ad0d5e95d65574e33bcb","ref":"refs/heads/main","pushedAt":"2024-06-05T11:49:57.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Update notebooks","shortMessageHtmlLink":"Update notebooks"}},{"before":"44c0930342a254b7e00c2a7203a60676f06cdbfd","after":"1b7fd8429a2e541401b65e2694b52dfdeeb4f844","ref":"refs/heads/main","pushedAt":"2024-06-05T11:12:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Falco version fixed","shortMessageHtmlLink":"Falco version fixed"}},{"before":"cbaae60be2ca3c123a149957562f3709f1afdfe8","after":"44c0930342a254b7e00c2a7203a60676f06cdbfd","ref":"refs/heads/main","pushedAt":"2024-05-21T07:42:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"POSIX-compatible command testing","shortMessageHtmlLink":"POSIX-compatible command testing"}},{"before":"393d3e2fcfb82588a183ba90370506bb3b187467","after":"cbaae60be2ca3c123a149957562f3709f1afdfe8","ref":"refs/heads/main","pushedAt":"2024-05-21T07:31:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Use `pigz` whenever available","shortMessageHtmlLink":"Use pigz whenever available"}},{"before":"036c6fc67a7cceac3e8ffc0ff927ece0097077ef","after":"393d3e2fcfb82588a183ba90370506bb3b187467","ref":"refs/heads/main","pushedAt":"2024-05-20T23:10:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Add R/python packages to conda description","shortMessageHtmlLink":"Add R/python packages to conda description"}},{"before":"168ee288ac47f2f234cfc967148d77fe107f95c8","after":"036c6fc67a7cceac3e8ffc0ff927ece0097077ef","ref":"refs/heads/main","pushedAt":"2024-05-20T14:42:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Add pigz to conda dependencies\n\nIn preparation for future upgrades (not yet used)","shortMessageHtmlLink":"Add pigz to conda dependencies"}},{"before":"a71e2a64ae4e039c0e72748b98b7e4780740a304","after":"168ee288ac47f2f234cfc967148d77fe107f95c8","ref":"refs/heads/main","pushedAt":"2024-05-06T20:28:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Support analyses with empty `ref_project`\n\nClose #176","shortMessageHtmlLink":"Support analyses with empty ref_project"}},{"before":"bf90851b4c2822735edd3a207ee2f79d9efdc47f","after":"a71e2a64ae4e039c0e72748b98b7e4780740a304","ref":"refs/heads/main","pushedAt":"2024-05-02T16:32:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Update SeqCode API endpoint to `v1`","shortMessageHtmlLink":"Update SeqCode API endpoint to v1"}},{"before":"33ff2fce0cdc4fd5168ef2d476321ee06db84b32","after":"bf90851b4c2822735edd3a207ee2f79d9efdc47f","ref":"refs/heads/main","pushedAt":"2024-04-24T17:07:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Bug fix preventing ANI indexing","shortMessageHtmlLink":"Bug fix preventing ANI indexing"}},{"before":"270d367bcb1ad6d863d8756b569b6524d5f38f13","after":"33ff2fce0cdc4fd5168ef2d476321ee06db84b32","ref":"refs/heads/main","pushedAt":"2024-04-15T21:39:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Prevent incomplete AAI/ANI tables","shortMessageHtmlLink":"Prevent incomplete AAI/ANI tables"}},{"before":"8ede7ac3fe31d66475514997ff14f44f628ab0e7","after":"270d367bcb1ad6d863d8756b569b6524d5f38f13","ref":"refs/heads/main","pushedAt":"2024-04-15T21:36:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Support indexing of extremely large collections","shortMessageHtmlLink":"Support indexing of extremely large collections"}},{"before":"86d07281b464f63ea63542c1ea86665daf10f445","after":"8ede7ac3fe31d66475514997ff14f44f628ab0e7","ref":"refs/heads/main","pushedAt":"2024-04-13T21:42:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Fix SSH issue","shortMessageHtmlLink":"Fix SSH issue"}},{"before":"be1ac4432ee219554e0f8f63b9d9a5c4899f6a7f","after":"86d07281b464f63ea63542c1ea86665daf10f445","ref":"refs/heads/main","pushedAt":"2024-04-13T21:02:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Temporarily disable EMBL testing","shortMessageHtmlLink":"Temporarily disable EMBL testing"}},{"before":"0ef11dbdb64adfca3c1501e6870fa224b836658c","after":"be1ac4432ee219554e0f8f63b9d9a5c4899f6a7f","ref":"refs/heads/main","pushedAt":"2024-04-13T19:49:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Auto-register hosts when running via SSH","shortMessageHtmlLink":"Auto-register hosts when running via SSH"}},{"before":"7c2de043b30963422b980633220beb506068b20e","after":"0ef11dbdb64adfca3c1501e6870fa224b836658c","ref":"refs/heads/main","pushedAt":"2024-04-12T00:26:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Fix issue with `miga find --add`","shortMessageHtmlLink":"Fix issue with miga find --add"}},{"before":"e18c6519918871d2fd10df2a41eb2d0939e2d268","after":"7c2de043b30963422b980633220beb506068b20e","ref":"refs/heads/main","pushedAt":"2024-04-01T23:41:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Vectorize distances to allow for larger matrices","shortMessageHtmlLink":"Vectorize distances to allow for larger matrices"}},{"before":"be0a10e6e48a53722238b34af8ab41a6abfcf828","after":"e18c6519918871d2fd10df2a41eb2d0939e2d268","ref":"refs/heads/main","pushedAt":"2024-04-01T04:22:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Extend cases for WGS fetching","shortMessageHtmlLink":"Extend cases for WGS fetching"}},{"before":"5d36c3c1a81d35435a7f08c4c53638416481d969","after":"be0a10e6e48a53722238b34af8ab41a6abfcf828","ref":"refs/heads/main","pushedAt":"2024-04-01T02:29:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Fatal error solved (when `oj` is installed)","shortMessageHtmlLink":"Fatal error solved (when oj is installed)"}},{"before":"2c6a7180bf8ad20811a5ad2bde6ca6aa2413c714","after":"5d36c3c1a81d35435a7f08c4c53638416481d969","ref":"refs/heads/main","pushedAt":"2024-03-23T13:37:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Rescue start and versions on result overwrites","shortMessageHtmlLink":"Rescue start and versions on result overwrites"}},{"before":"91ee900128d75f6cb6db87d0d29f78c37e29a442","after":"2c6a7180bf8ad20811a5ad2bde6ca6aa2413c714","ref":"refs/heads/main","pushedAt":"2024-03-22T13:40:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Fix FastAAI location for case-sensitive systems","shortMessageHtmlLink":"Fix FastAAI location for case-sensitive systems"}},{"before":"6ade0b41746f62427d492e6dcf960ef74ee83b26","after":"91ee900128d75f6cb6db87d0d29f78c37e29a442","ref":"refs/heads/main","pushedAt":"2024-03-20T20:36:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Use OJ instead of JSON if available\n\nThis might represent a large gain in performance, but currently testing it without requiring it","shortMessageHtmlLink":"Use OJ instead of JSON if available"}},{"before":"b43d9b126665ec8d043bdd2f63f2e5a56a310c9b","after":"6ade0b41746f62427d492e6dcf960ef74ee83b26","ref":"refs/heads/main","pushedAt":"2024-03-20T19:56:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Multithread `distances` task in `miga doctor`","shortMessageHtmlLink":"Multithread distances task in miga doctor"}},{"before":"94e6164706ea70cccf65762d87920e75ad37470b","after":"b43d9b126665ec8d043bdd2f63f2e5a56a310c9b","ref":"refs/heads/main","pushedAt":"2024-03-20T19:01:48.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Combine `miga get` params with `--file`\n\nClose #154","shortMessageHtmlLink":"Combine miga get params with --file"}},{"before":"ee9e9981030ce0cb818a04d87fe1ca99b4e95d54","after":"94e6164706ea70cccf65762d87920e75ad37470b","ref":"refs/heads/main","pushedAt":"2024-03-18T11:10:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Modest efficiency gains on `miga doctor`","shortMessageHtmlLink":"Modest efficiency gains on miga doctor"}},{"before":"da27eeda75788b915eb06da3bf0b873ce8d9c492","after":"ee9e9981030ce0cb818a04d87fe1ca99b4e95d54","ref":"refs/heads/main","pushedAt":"2024-03-15T19:59:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Update actions","shortMessageHtmlLink":"Update actions"}},{"before":"3120bd924b791e309c0c99a1d3448b64c3d00f09","after":"da27eeda75788b915eb06da3bf0b873ce8d9c492","ref":"refs/heads/main","pushedAt":"2024-03-15T18:58:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Reduce errors in extremely rare cases","shortMessageHtmlLink":"Reduce errors in extremely rare cases"}},{"before":"3692c90ade2a89993ab02621f7a22943997a4ce4","after":"3120bd924b791e309c0c99a1d3448b64c3d00f09","ref":"refs/heads/main","pushedAt":"2024-03-11T13:14:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Safer NCBI elink calls","shortMessageHtmlLink":"Safer NCBI elink calls"}},{"before":"b9fc848cd6550b2b3c75fbb9b872df56336ae21b","after":"3692c90ade2a89993ab02621f7a22943997a4ce4","ref":"refs/heads/main","pushedAt":"2024-03-10T20:02:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Add option `miga get --ncbi-taxonomy-dump`","shortMessageHtmlLink":"Add option miga get --ncbi-taxonomy-dump"}},{"before":"4a23a272ab65717f19ecdcf6b56d52d434a265fc","after":"b9fc848cd6550b2b3c75fbb9b872df56336ae21b","ref":"refs/heads/main","pushedAt":"2024-03-10T19:00:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"lmrodriguezr","name":"Luis M Rodriguez-R","path":"/lmrodriguezr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12363?s=80&v=4"},"commit":{"message":"Support for NCBI WGS synthetic records","shortMessageHtmlLink":"Support for NCBI WGS synthetic records"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXXJzXAA","startCursor":null,"endCursor":null}},"title":"Activity ยท bio-miga/miga"}