downsample_methcounts.pbs

#PBS -S /bin/bash
#PBS -l nodes=1:ppn=1
#PBS -l mem=700MB
#PBS -l vmem=700MB
#PBS -l pmem=700MB
#PBS -l walltime=300:00:00
#PBS -q cmb
#!/bin/bash
cd "$PBS_O_WORKDIR"

for i in $(cat downsample_list); do
python /home/cmb-panasas2/decato/bin/downsample_methcounts.py -i ${IN} -o $(dirname ${IN})/$(basename ${IN} .meth)_downsampled_${i}.meth -d ${i}
done