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I agree. This type of command would be very useful! As great as the interactive program is, it can be laborious when I have to generate multiple MSTs with different subsets of data, node colors, etc.
Hi,
thanks for grapetree, we use it a lot by uploading a mstree and metadata to a local grapetree instance in the browser.
However I wonder whether it is possible to create the grapetree visualizions (i.e. the json file) programmatically from the command line?
For instance, is there any such option as
grapetree --json --treefile mstree.nwk --meta metadata.tsv > grapetree_viz.json
?
This would be really helpful for updating the visualization whenever new data is available.
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