NumbaPendingDeprecationWarning type 'reflected list' found for argument 'a' of function 'contemporary'

[peterjc]

Using one of your example input files under Linux Python 3.7:

$ pip freeze | grep grapetree 
grapetree==2.2
$ pip freeze | grep numba
numba==0.54.1

$ grapetree -p Grapetree_Agona.profile > Grapetree_Agona.profile.tree
/mnt/.../conda/lib/python3.7/site-packages/numba/core/ir_utils.py:2139: NumbaPendingDeprecationWarning: 
Encountered the use of a type that is scheduled for deprecation: type 'reflected list' found for argument 'a' of function 'contemporary'.

For more information visit https://numba.pydata.org/numba-doc/latest/reference/deprecation.html#deprecation-of-reflection-for-list-and-set-types

File "/mnt/.../conda/lib/python3.7/site-packages/grapetree/module/MSTrees.py", line 35:
@jit(nopython=True)
def contemporary(a,b,c, n_loci) :
^

  warnings.warn(NumbaPendingDeprecationWarning(msg, loc=loc))

[kjolley]

Just upgraded our job server for PubMLST to the latest version of Ubuntu and now also experiencing this issue. Would be good to get a fix for this.