/
url_builder.html
130 lines (101 loc) · 4.9 KB
/
url_builder.html
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<html>
<head>
<script>
async function buildURL(protein, length, bioproject) {
//let protocol = window.location.protocol;
//let hostname = window.location.hostname;
//let port = window.location.port;
let path = '/tools/protein_schematic/';
//if (port != 80) {
// port = ':'+port;
//}
//else {
// port = '';
//}
let releaseVersion = 'WS278';
let releaseVersionJson = '';
//this will be what's needed when it goes into staging/production
//this can probably be a relative url too
//let releaseVersionURL = protocol + '//' + hostname + port + '/rest/version';
// let releaseVersionURL = '/rest/version';
//let releaseVersionURL = 'https://wormbase.org/rest/version';
// let releaseVersionResponse = await fetch(releaseVersionURL);
// if (releaseVersionResponse.ok) {
// releaseVersionJson = await releaseVersionResponse.json();
// releaseVersion = releaseVersionJson.version;
// }
// else {
// alert('fetching version via rest failed');
// }
// this line will have to go away when this goes into production
// it's just here for testing
// releaseVersion = 'WS274';
//probably could make this a relative url when it gets incorporated into the webiste
// let jbrowseBaseURL = protocol +'//' + hostname + port + path;
let jbrowseBaseURL = path ;
let baseURL = 'https://s3.amazonaws.com/wormbase-modencode/protein_schematic/'+ releaseVersion + '/' +bioproject + '/';
let urlTemplate = baseURL+'tracks/';
let trackPart = 'Exon%20boundaries';
//yes, the next four lines could be wrapped in a function since I'm doing the same thing over and over
let response = await fetch(urlTemplate+'seg/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2Cseg';
}
response = await fetch(urlTemplate+'signalp/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2Csignalp';
}
response = await fetch(urlTemplate+'tmhmm/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2Ctmhmm';
}
response = await fetch(urlTemplate+'ncoils/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2Cncoils';
}
response = await fetch(urlTemplate+'Catalytic%20residue/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2CCatalytic%20residue';
}
response = await fetch(urlTemplate+'Metal%20binding%20site/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2CMetal%20binding%20site';
}
response = await fetch(urlTemplate+'Post%20transcriptionally%20modified%20site/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2CPost%20transcriptionally%20modified%20site';
}
response = await fetch(urlTemplate+'Motifs/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2CMotifs';
}
response = await fetch(urlTemplate+'Selected%20BLASTP%20Homologies/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2CSelected%20BLASTP%20Homologies';
}
//console.log(urlTemplate+'Mass%20spec%20peptides/'+protein+'/trackData.jsonz');
response = await fetch(urlTemplate+'Mass%20spec%20peptides/'+protein+'/trackData.jsonz');
if (response.ok) { // if HTTP-status is 200-299
trackPart = trackPart + '%2CMass%20spec%20peptides';
}
let fullJBrowseURL = jbrowseBaseURL+'?data=data/'+bioproject+'&tracklabels=0&nav=0&tracklist=0&overview=0&loc='+protein+'%3A1..'+length+'&tracks='+trackPart;
//alert(fullJBrowseURL);
let linkoutJBrowseURL = jbrowseBaseURL+'?loc='+protein+'%3A1..'+length+'&tracks='+trackPart;
console.log(linkoutJBrowseURL);
document.getElementById("replaceme").innerHTML='<object id="innerJBrowse" type="text/html" style="width:100%;height:400px;overflow: auto;" data="'+fullJBrowseURL+'" ></object>';
document.getElementById("linkout").href = linkoutJBrowseURL;
return ;
}
</script>
</head>
<body>
<div id="replaceme" style="width:100%;height:400px;background-color:#fff;resize: vertical;overflow: auto;">hello</div>
<button type="button" onclick="buildURL('JC8.10a', 1113, 'c_elegans_PRJNA13758')">UNC-26, isoform a</button>
<button type="button" onclick="buildURL('C18D11.2', 266, 'c_elegans_PRJNA13758')">MAA-1</button>
<button type="button" onclick="buildURL('F11C7.3', 424, 'c_elegans_PRJNA13758')">VAP-1</button>
<button type="button" onclick="buildURL('Y48B6A.11', 922, 'c_elegans_PRJNA13758')">JMJD-2</button>
<button type="button" onclick="buildURL('T09D3.4a', 490, 'c_elegans_PRJNA13758')">NHR-216, isoform a</button>
<button type="button" onclick="buildURL('M7.7', 370, 'c_elegans_PRJNA13758')">M7.7</button>
<a id="linkout" href="">linkout<a/>
</body>
</html>