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Get error message while using openCyto:::.flowClust.2d #237
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These are internal private APIs not meant to be used directly by the end user. Try to always stick with public exported version of these functions, that is gate _* |
Hi Mike, I still got the same error message. Below is the code: Error message: I can provide the full script if it is needed. Many thanks for your help. Siu-hong |
Please take a look at the documentation of this API |
Hi Mike, Thanks. I am able to apply the gate_flowclust_2d to a flowframe. However, if I apply it to the flowset, I got the same error message. For the flowset I used, it is originally a cytoset. I use the function cytoset_to_flowSet to convert the cytoset to flowset. Any insight is appreciated. Thanks. Siu-hong |
Again, these gating functions only work with a single flowframe, if you want to work with flowset, you have to write a loop through the flowset, within the loop, extract flowframe from the flowset, then you can apply the function there,
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Thanks, I am able to get through it. |
I am able to use the followings:
openCyto:::.mindensity
rectangleGate
openCyto:::.singletGate
openCyto:::.boundary
When I tried to use openCyto:::.flowClust.2d, I got the following error message:
Error in as.character.default(x) :
no method for coercing this S4 class to a vector
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