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Error when running Rscript #98

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carolinasisco opened this issue Apr 30, 2022 · 1 comment

carolinasisco commented Apr 30, 2022

Hello, I was trying to run the Rscript provided for visualizing conserved regions using the following command line:

Rscript visualize.R ~/nocardia/ragtag_output/ragtag.scaffold.fasta ~/nocardia/nfarcinica.fasta ~/nocardia/fastANIresult.visual

However, I got:

Error: unexpected '<' in "<"
Execution halted

Any suggestions? Thanks

Member

cjain7 commented May 1, 2022

Can you share the two genomes, FastANI version, and the commands executed?

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