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How to get the alignment fraction value? #94

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liyangjie opened this issue Feb 15, 2022 · 1 comment
Open

How to get the alignment fraction value? #94

liyangjie opened this issue Feb 15, 2022 · 1 comment

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@liyangjie
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liyangjie commented Feb 15, 2022 •
edited

Hello everyone, I noticed that fastANI has a parameter --minFraction, and i want to know how to get the specific value of this “average alignment fraction" by fastANI. Thank you a lot!
@cjain7
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cjain7 commented Mar 29, 2022

See the last two columns in the output file. Ratio of the two values in each row should give you alignment fraction for that comparison.
https://github.com/ParBLiSS/FastANI#an-example-run

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