False report of no non-monophyletic taxa

[josephwb]

Ran synthesis and labelled_supertree/index.html says:

Non-monophyletic taxa: There were 0 non-monophyletic taxa.

There are tons of such taxa, as is revealed by labelled_supertree/broken_taxa.json. So imagine this is just a simple missed step in generating the html file.

[mtholder]

can you post the broken_taxa.json and the timestamps for it and the html files? Knowing the commands that were issued will also be crucial to debugging this.

[josephwb]

do you just want the tree collection and run it yourself? it takes ~10 minutes

[mtholder]

that would be fine too.

[josephwb]

sorry for delay; was at mechanics and they booted me off their network. sent collection to your gmail.

[kcranston]

If you post it somewhere (along with the commands you used to run syntheses), I can look too.