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Charge and multiplicity #31

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HenriqueCSJ opened this issue Aug 23, 2019 · 4 comments
Open

Charge and multiplicity #31

HenriqueCSJ opened this issue Aug 23, 2019 · 4 comments
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@HenriqueCSJ
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Could you, please, share an example on how to set charge and multiplicity?
I'm doing print("SCF Energy: ", pk.energy("pbe/def2-svp")) in a cobalt complex and it is dying after 100 SCF iterations (but the multiplicity should be 4 instead of 1 anyway).

@kzfm kzfm added the bug Something isn't working label Aug 24, 2019
@kzfm
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kzfm commented Sep 4, 2019

Hi HenriqueCSJ,

I added the multiplicity option to the energy and optimize methods. But I haven't tested it yet.
Please let me know if there is a bug or if you send some examples to us, we'll try them.

Thank you,

kzfm.

@HenriqueCSJ
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Hi! Thank you so much!
Could you share an example on how to use the new feature so I can give it some test?
(Is it updated on pip and conda or do I have to manually rebuild the code?)

@kzfm kzfm self-assigned this Nov 7, 2019
@kimandsharp
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Really nice wrapper. worked well for me to RESP charges of reduced nicotinamide. Now need to do oxidized, with net charge +1. How to do this and is there an example?
thanks. Kim Sharp

@iwatobipen
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iwatobipen commented Feb 7, 2020

Hi kimandsharp, you can set multiplicity as option when you call optimize.
https://github.com/Mishima-syk/psikit/blob/master/psikit/psikit.py#L65

Formal charge of molecule is calculated automatically by using mol2xyz.
https://github.com/Mishima-syk/psikit/blob/master/psikit/util.py
Unfortunately there isn't an example of RESP charge calculation of charged molecule. I'll try it if you can provide structure information of the molecule.
Thanks,

Taka

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