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requirement.txt for environment #1

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SarahAufmkolk opened this issue Feb 24, 2021 · 1 comment
Open

requirement.txt for environment #1

SarahAufmkolk opened this issue Feb 24, 2021 · 1 comment

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@SarahAufmkolk
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SarahAufmkolk commented Feb 24, 2021

Hello MilsteinLab,
congratulation on an exciting paper/algorithm! It would be very helpful if you could provide a requirement file for the python environment.
Best regards,
Sarah

PS. I want to add to this request that the error of "No module named 'scipy._lib.six" occurs, since the newer scipy doesn't have the module. (See link below.)
They suggest calling the module 'six' independently.
But frankly said I'm too much of a beginner with python to see where to change the modules in your code. I hope you can help me or suggest a scipy version for your environment.

wrwrwr/scikit-gof#5

@MilsteinLab
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MilsteinLab commented May 11, 2021

Hi Sarah,
apologies for the delay in response. We became aware of the issue with scipy._lib.six as well. We came up with a rough patch:
There is a change in lines 4 and 5 for the file titled “binned_statistic_64bit.py” since “scipy._lib.six” is apparently no longer being supported by python. The required changes are:

4> from six import callable

5> from six.moves import xrange

We'll work on adding a more detailed requirement.txt. The python version that comes when you install Spyder with Anaconda seems to suffice. Thank you for the feedback.

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