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Currently there is a single threshold - it makes sense to have a lower threshold for higher angle data.. There is an option in assemble_label now to have a threshold image
DONE: Use the new default filenames by default
clean up the notebooks to use default filenames (add experiment=ma1234, session=yymmdd, and get these from getcwd or silx or blissdata)
Change the compression in the sparse files to be faster for IO
Fixing up the assemble_label code to recycle the previous files (h5py.ExternalLink or VDS), this means refactoring the segmentation to be writing into fewer files, or assembling as it goes.
make pks_table.tocolf and have this be comparable to reading of a columnfile
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