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Filter results of hmmsearch #315

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davidecrs opened this issue Nov 14, 2023 · 0 comments
Open

Filter results of hmmsearch #315

davidecrs opened this issue Nov 14, 2023 · 0 comments

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@davidecrs
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Hi,

I'm using hmmsearch to understand if a model of interest is present in a set of ORFs predicted by Prodigal.
Specifically, I'm using the following code

hmmsearch --tblout hmmsearch_table.txt -E 0.00001 -o /dev/null --cpu 8 --notextw model.hmm orf_predicted.faa

Is it possible to filter the results based on the percentage of identical matches ( or %coverage) or execute the hmmsearch to get reliable results based on these criteria?
Do you have other suggestions to filter the results and to get only the reliable annotation?

I really appreciate any help you can provide.
Best regards

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