changelog.txt

# `kglab` changelog

## 0.6.6

2022-11-23

  * something is not quite right about source distributions... kudos to <https://stackoverflow.com/questions/608855/excluding-a-top-level-directory-from-a-setuptools-package>
  * update `setuptools` to workaround potential vulnerabilities
  * create `pyproject.toml` to support upcoming `pip` release
  * remove tests and other unnecessary files from source distribution


## 0.6.1

2022-04-20

  * automated RDF tests, coordinated with `Oxigraph`; kudos @Mec-iS, @Tpt
  * begin refactoring `KnowledgeGraph` as abstract classes, per #237
  * update to Morph-KGC 2.0.0 and update links to the new documentation; kudos @ArenasGuerreroJulian


## 0.6.0

2022-03-23

  * include use of YARRRML in the R2RML tutorial in ex2_1; kudos @cutterkom
  * support for substituting the binding variables into a SPARQL query
  * add a NumPy-backed `RDFlib.Store` plugin


## 0.5.3

2022-03-15

  * adjusting dependency versions to avoid conflicts


## 0.5.2

2022-03-15

  * bump up versions of dependencies to fit Py 3.7+
  * improve testing based on pytest; kudos @Mec-iS
  * allow configuration for `RDFlib.Store` plugins


## 0.5.1

2022-03-10

  * CI action to build/push container image to DockerHub on release; kudos @RishiKumarRay


## 0.5.0

2022-03-08

  * improve Dockerfile (e.g., for use in regulated environments)
  * refactor tutorial dependencies out of library
  * remove dependency on PyTorch


## 0.4.4

2022-02-27

  * integration of `morph-kgc`; kudos @Mec-iS and @ArenasGuerreroJulian


## 0.4.3

2022-02-10

  * improved GPU detection when RAPIDS is not installed


## 0.4.2

2021-12-13

  * update `pySHACL` and `OWL-RL` to track updates in `RDFlib`
  * fixed `abort_on_error` flag for `pySHACL` integration; kudos @fils


## 0.4.1

2021-11-26

  * further testing/config for NVIDIA GPUs
  * fixes for Snyk security advisories
  * update to `RDFlib` 6.x, removing use of `json-ld` plugin
  * use `nbmake` to add test coverage of example notebooks into the CI pipeline; kudos @Mec-iS


## 0.4.0

2021-05-10

  * add multifile support for `load_jsonld()`; kudos @Ankush-Chander
  * warning about NumPy/TensorFlow version conflicts; kudos @CatChenal
  * roll back NumPy requirement to >= 1.19.2
  * documenting notes about how to handle "PEP 517" errors
  * add multifile support for `load_parquet()`; kudos @Ankush-Chander
  * import JSON from Roam Research export
  * add docker-compose support for tutorial; kudos @louisguitton
  * note the PSL dependency on Java JDK
  * Visualize a SPARQL query using PyVis; kudos @pebbie
  * CI based on GitHub Actions; kudos @louisguitton


## 0.3.0

2021-04-23

  * add conda `environment.yml` plus instructions
  * use `bandit` to check for security issues
  * add `pre-commit` hooks
  * add `lgtm` code reviews (slow, not integrating into GitHub PRs directly)
  * add use of `pipdeptree` to analyze dependencies
  * refactor docs to use Divio design patterns; kudos @louisguitton
  * created `SECURITY.md` security policy
  * using Snyk for security audits of dependencies (it has some troubles)
  * testing/correcting the PSL examples; kudos @louisguitton
  * include first user quote; kudos @kaaloo !!
  * multifile decorator (supports globs) for `load_rdf()`; kudos @Ankush-Chander
  * fixed bug in SubgraphTensor null check; kudos @dvsrepo
  * prep for pytorch_geometric integration; kudos @dvsrepo
  * add `as_tensor()` support for PyTorch


## 0.2.1

2021-03-12

  * tutorial proofreading and corrections; kudos @louisguitton
  * better exception handling for RDF construction, parsing, serialization
  * `build_nx_graph()` now requires a `networkx.DiGraph` directed graph as an argument
  * add DOI to README, CITATION, and docs
  * add contributor instructions
  * neo4j integration via `neosemantics`; kudos @gauravjaglan
  * replace `GPUtil` with `pynvml` as recommended by NVidia; kudos @kingmesal
  * option to enable NVidia GPU use, if devices are available and libraries are installed
  * using `cuDF`/`cuGraph` in lieu of `pandas`/`networkx` where possible; kudos @BradReesWork


## 0.2.0

2021-02-07

  * project milestone release
  * begin integration of `csvwlib`


## 0.1.8

2021-01-31

  * hotfix: backing out the `igraph` dependency; too many installation issues with it
  * factory pattern to build an `igraph` object allows caller to create and pass in, instead


## 0.1.7

2021-01-30

  * fix for `save_parquet()` since `storage_options` won't be used by `pandas` before 1.2.0
  * introduced `SubgraphMatrix` and `SubgraphTensor` as subclasses for the base vectorization
  * introduced `PSLModel` class for building *probabilistic soft logic* models
  * using `icecream` in methods that require verbose traces


## 0.1.6

2021-01-19

  * rollback `pandas` to 1.1.5 which is the latest stable on Ubuntu; see #94
  * revise `pyvis` use as a factory pattern
  * extend RDFlib serialization with `urlpath` support
  * extend all serialization to support file-like objects
  * including `gcsfs` and `fsspec` to leverage cloud bucket access in `pandas`
  * added `code_of_conduct.md`
  * code checking based on `pylint`
  * added accessor methods, e.g., `KnowledgeGraph.rdf_graph()`
  * updated `pandas` usage for direct Parquet/Arrow calls, e.g., `read_parquet()` and `to_parquet()`
  * updated `pyshacl` usage to >= 0.14.1 to support `inplace` graph manipulation (inference)


## 0.1.5

2021-01-04

  * renamed serialization methods, e.g., `save_ttl()` -- **WILL BREAK THINGS**
  * impl `load_rdf_text()` and `save_rdf_text()` to deserialize/serialize as text
  * type checking based on `typing` and `mypy`
  * corrected the `networkx` examples to use `DiGraph` for directed graphs
  * generated `meta.yml` for conda support
  * use `mkdocs` to generate documentation
  * add method to return SPARQL query result set as a `pandas` DataFrame
  * integrate with `python-igraph`, `leidenalg`, `cairocffi` to support iGraph
  * provide simple `OWL-RL` inference with `infer_rdfs_closure()` and `infer_owlrl_closure()`
  * add `Subgraph` class for projecting onto `networkx`
  * add `Measure` class for measuring graphs and creating simplex generators
  * use `coverage` for unit test coverage
  * use `chocolate` for enhanced kwargs
  * make `KnowledgeGraph` class GPU-aware
  * add `ShapeFactory` and related classes for evolving shape prediction


## 0.1.4

2020-12-06

  * added `pySHACL` examples
  * resolved Google Colab errors registering the `RDFlib-jsonld` plugin
  * comparing timing info across serialization methods
  * simplified the example notebook naming convention


## 0.1.3

2020-12-04

  * resolved removal of `grave` dependencies
  * added arrows to `pyvis` example by making it a directed graph
  * kudos @dmoore247


## 0.1.2

2020-11-30

  * support for dependabot
  * added a logo
  * interactive visualizations in `pyvis` and `grave`
  * SPARQL query examples
  * running graph algorithms in `networkx`
  * Parquet files using `pyarrow`
  * examples of annotation that combine use of SPARQL, SKOS, etc.
  * added instructions for installing/running JupyterLab
  * examples of SRL inference using `pslpython`
  * demo use of vector embedding with `gensim`
  * examples of string similarity with `pylev`


## 0.1.1

2020-11-09

  * first distribution on PyPi


## 0.1.0

2020-10-25

  * initial check-in