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Genotyping of variants resulted from multi-sample Mutect2 (question) #129

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mkyriak opened this issue Jun 4, 2023 · 0 comments
Open

Genotyping of variants resulted from multi-sample Mutect2 (question) #129

mkyriak opened this issue Jun 4, 2023 · 0 comments

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@mkyriak
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mkyriak commented Jun 4, 2023 •
edited

Hello,

I would like to genotype variants detected with Mutect2. The variants were identified from targeted sequencing of high coverage (> 500x). Do you have any parameters to recommend for running graphtyper genotype with high coverage data? I tried --no_filter_on_coverage parameter but I am curious if you have any other suggestion,

Thank you in advance for your time!
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