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.gitignore
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/
.gitignore
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# Build files
/release/
/reldeb/
/*build*/
/*debug*/
/*-build/
/profiling/
/compilation_database/
example_test.vcf
*.log
.nfs*
*.bak
*.git*.sh
# ggtags
/GPATH
/GRTAGS
/GTAGS
# Ignore data files
test/data/graphs
/data
# Ignore simulated data
test/simulated_data/fasta
test/simulated_data/graphs
test/simulated_data/graphtyper_call*
test/simulated_data/logs
test/simulated_data/results
test/simulated_data/sam
test/simulated_data/stats
test/simulated_data/truth.vcf*
test/simulated_data/vcfs
test/simulated_data/base_file.vcf*
test/simulated_data/reference.fa*
test/simulated_data/all_samples_pool_*
# Real data is never in this repo
test/real_data/all_bams
test/real_data/.BAMS
test/real_data/*.out
test/real_data/graphs
test/real_data/*.vcf.gz
test/real_data/*.vcf.gz.tbi
test/real_data/*results
test/real_data/*vcfs
*.bam
*.bam.bai