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Implement tau leaping #2

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jmason42 opened this issue Dec 19, 2018 · 4 comments
Open

Implement tau leaping #2

jmason42 opened this issue Dec 19, 2018 · 4 comments
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enhancement New feature or request

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@jmason42
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The exact SSA from Gillespie isn't practical at scale. An approximate (i.e. tau leaping) approach could use the same interface (plus some additional simulation precision parameters).

@jmason42 jmason42 added the enhancement New feature or request label Dec 19, 2018
@jmason42 jmason42 self-assigned this Dec 19, 2018
@prismofeverything
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I would love to see this in action.... I had some concerns about tau leaping before reverting to the degenerate case (getting stuck in a state where it is just advancing at the smallest time step) but it would be great to see a more convincing demonstration.

@jmason42
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Tau leaping will really shine in cases where a system is well modeled as ODEs, but for one reason or another you still want discretization or stochasticity.

@eagmon
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eagmon commented Dec 20, 2018

@jmason42 -- you had a working example of tau leaping. Could that be brought in here?

@jmason42
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Unfortunately not; that implementation was very system-specific. There may be some adaptable elements but it will largely be a ground-up implementation.

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