Get the closest profile

[mweberr]

Hi,
I imported the PubMLST scheme for cgMLST Mycobacteria using PrepExternalSchema and called by local assemblies
with AlleleCall . Is it possible to determine the closest profile of the found alleles, i.e. to a comparison of found alleles with a profile table from PubMLST ?

Original result :
Closest profile
cgST-5953
Mismatches
104
Loci matched
640/744 (86.0%)

Best, Michael

[rfm-targa]

Hello @mweberr,

Thank you for your interest in chewBBACA. We plan to implement a module that determines the closest profiles based on single or multiple TSV files with allelic profiles. However, at the moment, chewBBACA does not include any functionality to find the closest profiles or determine/compute cgMLST clusters to assign cgSTs. I can't give you an estimate on when we'll add the new module, but I'll be sure to let you know through here when it's available.
Don't hesitate to reach out if you have any more questions.

Rafael